Gene detail

Detail information of GWHGAAEX003828/evm.TU.scaffold_14.166

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0917	6.00E-108	Uncharacterized conserved protein
nr	gi\|672158207\|ref\|XP_008798835.1\|	1.47E-154	PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog [Phoenix dactylifera]
Swissprot	tr\|Q9SZ15\|LIP5_ARATH	2.00E-108	Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 {ECO:0000303\|PubMed:17468262}
trEMBL	tr\|M0SDL5\|M0SDL5_MUSAM	2.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P10980_001}
TAIR	AT4G26750	6.00E-108	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	6730656	6762045	+

Transcript Sequence
>GWHTAAEX003828 ATAAACTATAGTTCATACGTTGTTGATAACTGACTTTTCGTCTTCCGTCTCAAAAGGAAGGCGCAGGGCTGCAGAGCCATGGCAAGTGATGCTGAGCCAGCTAAGCTTCTTCTCCCATTTCTGCAAAGAGCCGATGAGCTCCAGAAGCACGAACCCCTTGTCGCCTACTATTGTAGATTGTATGCGATGGATAGAGGACTCAAGATCCCCCAAAAGGAGAGAACGAAGACGACCAACGCCCTCCTTGTTTCTCTCATGAATCAGCTTGAGAAGGATAAAAAATCGCTTAAATTAGGGTCTGAGGACAACTTACATGTGGAAGGATTTGCTTCCAATGTTTTTGCAAAGGCAGACAAGCAAGATCGTGCTGGACGAGCTGACCTGAATACTGCTAAAACTTTCTATGCTGCTAGCATTTTCTTTGAAGTTTTGAATCAGTTTGGTGAACTTGCACCTGATATTGAGCAAAAGCTAAAATATTCAGTTTGGAAAGCGGCAGATATACGAAAAGCTTTGAAAGAAGGAAGAAGGCCAGAACCTGGGCCTCCCGGTGGTGATAAAGATCTTGCCTCATCAAGCCCTCAGACTAACACAAATGTTGTGGATTCAAACGAAAGCATCCAAACCAAATTTTCAGGCGGATCATCAACTGAACAAAAATCAGAACAGCAATTTCATGTGACAAATGATCTTGGAAGTGGGAGTCTTAACTACAATGGTACCAATGATCCATCTCAGCCTCCACATAAGGAAATAAAGAGTGACAGTGTCAACTACGCCGGAGCCAGCGCTTCTTCTCATCAGCCTGACATGGGGCATAATGAGAGCATCAGCTACTCCGGAGCCAATGTTCCATCTACTAAAATCAGTCCTCGCGCTGCTTCCTTGCCGCCCCCTTACTCCGCCGGAGATTTTGCCGCCGGCGACTACCCGCAGTCTTACCCTCATAACTACCTCCAGCAATCATATGCTTCCTACGAGCAGCAGCAGCAAGCATTTGTTGGACAAAGCCATCACCCAACTGAGAACCCCTACTCTTACCCAAACTTCCAGTCTTACCCCAGCTTTCAAGAAAGCACTTTTCCTACAGTGCCGACTCAGCATCATTCCCTCTCGAGCTACGCAGCACAGTACGGGAATGTCAACGGAAATCAGGCAGGATCTTCGGCATCATCGCCGCCAGCTGCAGGATACAAGTATGACAGCAATTATCAGCCTCCCGCAGAGAAGATCGCGGAGGCTCACAAGGCCGCCAAATTCGCTGTTGGAGCACTGGCCTTCGACGACGTGGCCGTCGCCGTCGATTTTCTTCGTCAATCGCTTGAGCTGCTCACCAATCCTTCCGCCGAACCTCATTGATTTTGAACTGCCTGGAGCGGTTTTTCATTTTATAGTTACATACGCACGGGTGCGCGCGCACGCACGCATTTTGTATATTGTGATTTGGCTGTATAAACTAGCCGGCTCTGTTCGAACTCTGGGGAGCTTCATTTGTTGCTTCTGATATTACTGTGCTTTTGCCTTATACATCATGTAATCAATCATTCACATTCAATTTATAAAGTTTGGCTGAATAAATGATATTTTTCTACAAGAAAAATTGATAAATGGGGTTATTGATTATGG

Network for GWHGAAEX003828

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04652.15	Vta1	13	148	1.00E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12199	VTA1, LIP5	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.600
SRP064423	SRR2545915	Juvenile tuber	21.760
SRP108465	SRR5643513	five period of Gastrodia elata	20.100
	SRR5643514	five period of Gastrodia elata	22.460
	SRR5643515	five period of Gastrodia elata	24.140
	SRR5643524	five period of Gastrodia elata	25.780
	SRR5643525	five period of Gastrodia elata	38.940
	SRR5643528	five period of Gastrodia elata	41.330
	SRR5643658	five period of Gastrodia elata	42.560
	SRR5643659	five period of Gastrodia elata	19.180
	SRR5643660	five period of Gastrodia elata	19.810
	SRR5643661	five period of Gastrodia elata	21.000
	SRR5643662	five period of Gastrodia elata	25.030
	SRR5643663	five period of Gastrodia elata	22.270
	SRR5643664	five period of Gastrodia elata	23.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.640
SRP279888	Gastro	Gastrodia elata tuber	26.45
	Juven	Juvenile tuber	27.08
	Mother_Gastro	Mother tuber of Gastrodia elata	53.22
	Mother_Juven	Mother tuber of Juvenile	45.51