Gene detail

Detail information of GWHGAAEX003829/evm.TU.scaffold_14.167

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|269127362\|ref\|YP_003300732.1\|	4.00E-26	metallophosphoesterase [Thermomonospora curvata DSM 43183]
KOG	KOG0305	0	Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits
nr	gi\|743775453\|ref\|XP_010918104.1\|	0	PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Elaeis guineensis]
Swissprot	tr\|Q9SZA4\|CDC21_ARATH	0	Cell division cycle 20.1, cofactor of APC complex
trEMBL	tr\|M0RUS7\|M0RUS7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P23470_001}
TAIR	AT4G33270	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	6773989	6776430	+

Transcript Sequence
>GWHTAAEX003829 ATGGATGTAGGAAATTTCAATTATTCATTATCGACATCTGTTGAGAAGTCTCAATCAAGATCTCGACAACCCCTCACGAGGGTTGGATCCACAGTGTACATTCCCTCTCTCCGCACTACTTCCAATCCATCTTTCTGCAGGCAAAGCGGAGACAGATTTATACCGGATAGATCTGCAATGGATTTTGATGTTGCCCGCTACTTGCTATGGCAACCGAGAAAGGAAAAAGAGAATGCTGAAGTTGTTTCTCCTGCAAAAGGTGCCTATCGCAAGCTTCTTGCCGACACCCTTCTGAACAACAGAACCAGGATTTTGGAATTCAACCGAAAGATTCCGGTTTCCGCCGATTCAATGCTTGCCGCAATTTATGATGCTTCATCTACCAACCAAAGCAAGATCGCCAAGAACAAAAGATACATTCCTCAGTCAGCGGAGAGGACATTAGATGCTCCGGATCTGGTGGATGATTTCTATTTGAATCTGCTTGATTGGGGAAGCAAAAACGTTCTTTCGATCGCTCTTGGAAGCACTGTGTACTTGTGGAATGCTTCTAAAGGCACGACTTCTGAGCTTGTGACTGTTGATGAAGATCTTGGTCCGGTTACCAGTGTCAGCTGGGCTCCTGATGGTCAGCACATTGCCATTGGATTGAACAACTCTCATGTTCAACTGTGGGATTCAAACTCTGCTCGACTTTTGAGAACAATGAAACAAATCCATCAATCTCGTGTTGGAAGCCTTGCTTGGAATGACAGCATCCTCACAAGTGGGGGAATGGATGGGAAGATTGTGAACAATGATGTGAGGATAAGAAAGCATGAACTCCATACTTACGGAGGCCACCAGCAAGAAGTGTGCGGCTTGAAATGGTCCGCATCTGGCAAGCAGCTGGCCAGCGGTGGAAATGACAATCTGCTCCATATCTGGGATTCCTCCATCTCTTCCTCTTCGCTCCCAGCAGCTGCAAATCAAAACCAATGGCTTCATAGATTTGATGGCCACAATGCAGCAGTCAAGGCCCTGGCTTGGTGCCCTTTCCAGAACAATTTGCTTGCTTCCGGTGGAGGCGGAACTGACAGGTGCATCAAGTTCTGGAACACAGTCACTGGAGCTTGCTTGAATTCTGTCGACACCGGCTCTCAGGTTTGCGGGCTGCTGTGGAACAAAAATGAGCGGGAGCTGCTGAGTTCTCATGGTTTTACTCAGAATCAGCTCACATTGTGGAAATATCCATCAATGGCGAAGGTTGCTGAGCTCAATGGGCATACGTCTAGAGTTCTTTATATGACTCAGAGCCCTAATGGATGCACGGTGGCGACTGCGGCTGGTGATGAGACTCTAAGAATTTGGAATGTGTTCGGGAATCCGGAAGCTGGTAATAAGCCCGCAGCTAAGGCAAAATGCAGGGAACCATTTGCCAATTTTAGCCGAATCAGATGAGAGTTTCTTATGTGAGGATTGGAAGGAAGAGAGTATGAACTGTTTGAGTTCCTGAAGCTGGAATTTGTATCCTCCAAGATTTTGGCGCTCTGAAGTTTATTGGCTGAATTCCCGTCAGCCACTTTCAAAAAATATCATGAACTATAAAAAAGACTGGATTGAAGCCGGCAATCCTTTCTGGTAATGCAGCATAATCTGCGACATTAACTCTCAAGAACCCTTTTTGAATAAACGTCCGTCAGAATTCCTAATTGTAATATTATTATGTTCTTATCAGAGTGACTAATTTTGTGTACAATTATTCTTTGCAATAATATTTTGATTAGCCCATTGTATTTTGAGAGAAGTTTAAGCTTCTATTTAATTTCAAATTAATCTTTAGATCTCTATTGGAGTTTGTTCTCTCTAACATGGAGCTAACCTTTCTTCTGCTATATTTATGTTAAGGCAGTTTTA

Network for GWHGAAEX003829

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.6	ANAPC4_WD40	195	251	1.90E-07
PF00400.31	WD40	274	310	2.40E-07
PF00400.31	WD40	327	366	0.00011
PF00400.31	WD40	416	451	0.0061

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K03363	CDC20	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.160
SRP064423	SRR2545915	Juvenile tuber	0.090
SRP108465	SRR5643513	five period of Gastrodia elata	1.090
	SRR5643514	five period of Gastrodia elata	1.440
	SRR5643515	five period of Gastrodia elata	0.780
	SRR5643524	five period of Gastrodia elata	1.040
	SRR5643525	five period of Gastrodia elata	1.000
	SRR5643528	five period of Gastrodia elata	0.380
	SRR5643658	five period of Gastrodia elata	1.370
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.070
	SRR5643661	five period of Gastrodia elata	0.080
	SRR5643662	five period of Gastrodia elata	0.040
	SRR5643663	five period of Gastrodia elata	0.060
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.550
SRP279888	Gastro	Gastrodia elata tuber	0.04
	Juven	Juvenile tuber	0.05
	Mother_Gastro	Mother tuber of Gastrodia elata	0.02
	Mother_Juven	Mother tuber of Juvenile	0.05