Detail information of GWHGAAEX003832/evm.TU.scaffold_14.171
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0007 | 0 | Splicing factor 3a, subunit 1 |
| nr | gi|695008110|ref|XP_009390632.1| | 0 | PREDICTED: probable splicing factor 3A subunit 1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8RXF1|SF3A1_ARATH | 0 | Probable splicing factor 3A subunit 1 |
| trEMBL | tr|M0SBL5|M0SBL5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P03970_001} |
| TAIR | AT1G14650 | 0 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 6905597 | 6909144 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003832
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01805.19 | Surp | 65 | 115 | 1.50E-17 |
| PF01805.19 | Surp | 196 | 247 | 1.80E-17 |
| PF12230.7 | PRP21_like_P | 267 | 487 | 1.50E-56 |
| PF00240.22 | ubiquitin | 750 | 817 | 2.30E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12825 | SF3A1, SAP114 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 68.970 |
| SRR2545915 | Juvenile tuber | 56.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.680 |
| SRR5643514 | five period of Gastrodia elata | 39.620 | |
| SRR5643515 | five period of Gastrodia elata | 40.000 | |
| SRR5643524 | five period of Gastrodia elata | 37.330 | |
| SRR5643525 | five period of Gastrodia elata | 44.530 | |
| SRR5643528 | five period of Gastrodia elata | 36.400 | |
| SRR5643658 | five period of Gastrodia elata | 42.740 | |
| SRR5643659 | five period of Gastrodia elata | 73.660 | |
| SRR5643660 | five period of Gastrodia elata | 84.600 | |
| SRR5643661 | five period of Gastrodia elata | 71.310 | |
| SRR5643662 | five period of Gastrodia elata | 71.360 | |
| SRR5643663 | five period of Gastrodia elata | 82.680 | |
| SRR5643664 | five period of Gastrodia elata | 79.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 68.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 61.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 79.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 75.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 89.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 71.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 71.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 53.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 68.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 54.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 54.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 63.79 |
| Juven | Juvenile tuber | 84.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 40.21 | |
| Mother_Juven | Mother tuber of Juvenile | 76.19 |