Detail information of GWHGAAEX003836/evm.TU.scaffold_14.179


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297620618|ref|YP_003708755.1|1.00E-17hypothetical protein wcw_0377 [Waddlia chondrophila WSU 86-1044]
KOGKOG19462.00E-71RNA polymerase I transcription factor UAF
nrgi|743809102|ref|XP_010928509.1|1.38E-124PREDICTED: uncharacterized protein LOC105050254 [Elaeis guineensis]
trEMBLtr|M0SDV7|M0SDV7_MUSAM2.00E-109Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P11900_001}
TAIRAT4G223602.00E-71SWIB complex BAF60b domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001270312637063587-
Transcript Sequence

Network for GWHGAAEX003836

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08766.10DEK_C2521.20E-06
PF02201.17SWIB1642347.50E-29
PF02201.17SWIB2693411.70E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.240
SRR2545915Juvenile tuber29.700
SRP108465SRR5643513five period of Gastrodia elata30.210
SRR5643514five period of Gastrodia elata26.360
SRR5643515five period of Gastrodia elata28.060
SRR5643524five period of Gastrodia elata25.650
SRR5643525five period of Gastrodia elata40.110
SRR5643528five period of Gastrodia elata30.270
SRR5643658five period of Gastrodia elata28.050
SRR5643659five period of Gastrodia elata27.330
SRR5643660five period of Gastrodia elata35.070
SRR5643661five period of Gastrodia elata26.940
SRR5643662five period of Gastrodia elata26.490
SRR5643663five period of Gastrodia elata27.260
SRR5643664five period of Gastrodia elata31.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_141.160
SRR6049655Rhizomagastrodiae_C368-T10_good_139.380
SRR6049656Rhizomagastrodiae_C368-T07_good_131.080
SRR6049657Rhizomagastrodiae_C368-T07_good_154.360
SRR6049658Rhizomagastrodiae_C368-T04_good_153.480
SRR6049659Rhizomagastrodiae_C368-T04_good_176.520
SRR6049660Rhizomagastrodiae_C368-T01_good_154.030
SRR6049661Rhizomagastrodiae_C368-T04_good_150.360
SRR6049662Rhizomagastrodiae_C368-T01_good_131.560
SRR6049663Rhizomagastrodiae_C368-T01_good_137.760
SRR6049664Rhizomagastrodiae_C368-T10_good_129.280
SRR6049665Rhizomagastrodiae_C368-T10_good_129.280
SRP279888GastroGastrodia elata tuber 49.69
JuvenJuvenile tuber60.13
Mother_GastroMother tuber of Gastrodia elata 38.58
Mother_JuvenMother tuber of Juvenile 68.51