Gene detail

Detail information of GWHGAAEX003838/evm.TU.scaffold_14.184

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428320698\|ref\|YP_007118580.1\|	1.00E-06	hypothetical protein Osc7112_5970 [Oscillatoria nigro-viridis PCC 7112]
KOG	KOG4698	0	Uncharacterized conserved protein
nr	gi\|695045086\|ref\|XP_009410324.1\|	0	PREDICTED: beta-(1,2)-xylosyltransferase [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LDH0\|XYLT_ARATH	0	Beta-(1,2)-xylosyltransferase
trEMBL	tr\|M0TJ83\|M0TJ83_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P20460_001}
TAIR	AT5G55500	0	beta-1,2-xylosyltransferase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	7220975	7230574	+

Transcript Sequence
>GWHTAAEX003838 ATGACTCGCCGGCAGCGAGTCCTAGTCATCAGAAGCTTGATCTTCCTCTTCTCCATCAACGCTGTATCTCTTACGCTCTACTTCTTCCTCCAATCTTCCTCTCCTACCTCTTCCGAAATCCAAAATCCATCACTAGCCACCTCATCCCTCAAGCCTTGGCCTTCTCTCCCCTCCTTCATCCCCTGGAATTCAAACCCTAAGCCTCCGCTCCGCTCCTGCGAGGCTTATTTCGGCAATGGGTTCTCTCGAAGAATCGATGTCCACGGCGGCAGCGGTGGCGGGTGGTTCCGGTGCTTCTACAGCGCGACGCTTAGGAGTTCTATTTGCGAAGGGGGACTGGTGCGTATGGATCCGAGCAAGATCAAGATGTCGTTTGGAGGGGAGGATTTGAAGTCAGTTATTGGTCGGAGGGAGGAGCACGAATTGCCCGATTTTGAGAACGGGTCGTTCGAAATTGAGGGTGATGGAAGTCGAGGCGAGGGGAAGCTGGTGAATGAGGAGTTTCTTGATCAGTATGTACCGCGCGGGGCTGTGCAGTTTCATACTATGCGAACGTTGATGGAGTCGATGAGAATTGTTGAACCTGGGAAACTCCAATGCTCACAGTGGGTAGAAGAAGCTACAGTTCTGGTGACCCGCTTTGAGTATGCGAACCTCTTCCACACCGTTACAGATTGGTACAGCGCATATGCTTCTTCCAGAGTTACCGGGTTGCCCTACAGGCCTCACTTGATATTTCTGGATGGCCATTGCAAGACATCGTTGGAAGAAACTTGGGAGGCGCTCTTCAGCAGCGTCCGATACGCCAAGCACTTTACAGGCAGTGTGTGCTTCCGGCATGTGGTACTGTCGCCACTGGGATACGAGACCGCACTGTTCAAGGGCTTGTCGGAGCCGATCAGCTGCCAGGGCGCCCCCGCGAACCTTCTCAGATCGATCCCTGAGGGCCAGAAAACCGCCAGGCTGCTGGAGTTTGGGGAGATGCTCCGATCCGCCTTCGGCTTTCCGGCTGGCAAGGATTACTTGGCATCCGTAGCTCACAGCATCCTCTTTGTCCGCCGCGAGGATTACTTGGCCCACCCTCGCCACAGCGGAAAGCTGGAGGCCCGGCTGAGCAATGAGGAAGAGGTTTTCACGGCGGTGAAGAGCTGGGCGGCTGCGGCAGCGAACCACAGCAAATGCAGGCTGAGTGTTGTGAATGGCCTGTTCGCCCATATGTCAGTGAGGGAGCAAGTGGGCGCGGTTGCAGAGGCTTCGGTTGTGGTAGGGGCGCACGGAGCTGGCCTGACCCACTTGGTGTCGGCCAGATCGAGAACGGTGGCGCTCGAGATAATAAGCAGCCGGTATCAGCGGCCCCATTTCTCACTGATTTCTCAGTGGATGGGGCTGGAATATCGCGCAATCAATCTCGCCGGATCATATGCCCGCCCCCGTATGGTTCTTGATGAGCTCAGTACCATACTCACCAGCCTTGGATGCTCCTAG

Network for GWHGAAEX003838

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04577.13	DUF563	219	468	2.00E-21

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT61

KEGG pathway

KO	Enzyme	pathway	mapID
K03714	XYLT	Metabolic pathways	map01100
K03714	XYLT	Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0016757	Molecular Function	transferase activity, transferring glycosyl groups

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.670
SRP064423	SRR2545915	Juvenile tuber	25.380
SRP108465	SRR5643513	five period of Gastrodia elata	46.920
	SRR5643514	five period of Gastrodia elata	40.560
	SRR5643515	five period of Gastrodia elata	36.760
	SRR5643524	five period of Gastrodia elata	35.030
	SRR5643525	five period of Gastrodia elata	35.010
	SRR5643528	five period of Gastrodia elata	35.710
	SRR5643658	five period of Gastrodia elata	31.360
	SRR5643659	five period of Gastrodia elata	50.840
	SRR5643660	five period of Gastrodia elata	51.260
	SRR5643661	five period of Gastrodia elata	54.660
	SRR5643662	five period of Gastrodia elata	56.020
	SRR5643663	five period of Gastrodia elata	48.420
	SRR5643664	five period of Gastrodia elata	48.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	49.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	60.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	67.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	77.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	77.470
SRP279888	Gastro	Gastrodia elata tuber	35.09
	Juven	Juvenile tuber	38.54
	Mother_Gastro	Mother tuber of Gastrodia elata	34.47
	Mother_Juven	Mother tuber of Juvenile	22.88