Gene detail

Detail information of GWHGAAEX003856/evm.TU.scaffold_14.212

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743808945\|ref\|XP_010928465.1\|	0	PREDICTED: uncharacterized protein LOC105050227 [Elaeis guineensis]
trEMBL	tr\|M0U432\|M0U432_MUSAM	3.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P27750_001}
TAIR	AT5G12920	1.00E-108	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	8334658	8416418	-

Transcript Sequence
>GWHTAAEX003856 ATGGAGGATACCTCTGTGCGTTGCTTTTGGCGGGCAACTACTGATCCTGAGACGTTGATGCAGAGATTCATCACCCAGGTCGCTTATCAAGAACGACGCAGGCCTCTTTGCCGGTCGGGATGGAAGCGAAGTGCCGTTGAACTGGATGGTAGGATTTCTTCTGCGTTCCGACGTGACTCTAGCCAGCTATTCCTTGATTTGTATGCTGAGGTTAGGTCTTTTGGGCATAATTGCTGCTCTCGCCCTAACTGTCCAACGCATGCTGCTCGACTTCTTAGTGCTGCGAACCAAAGCAGGCCTAGCCCTTTTATAAGGGAGGGAATTTCAGGCCTGGAATTTGATTCTAAGGGTATCTTTGTGGCATCTGTGACAAAATCTGGGTGTTTAACTGTGCTTGACTTTGAAAGCTTGTATTGCTCTGTTTATGGTCCAAATTCAAATTGGTCCGAAGATGAAACAAAATGTGTGCTTCACATCTGTACATCAATGCGCCTAGATGCTGTTCAATGGAATCCATCCAATCAAGATGAGGTATGCTGTGCTTCAAGAAACCATGGTACAATTCTTCTTTATGACATTGGTTACGTGTCATCTGAGCCCATCGAAGTCTTAGACAAAGGGAAGCTTAAGTTTTCTGTACCTGAAGCTTTCAATGGGTTTTCTGAAATTGCATTTGCTTCAGCTGATAAGTCAAGGTTGCTTGCATCTGGATTGGATGGTGCTATCTACATATGGGATAGGCGTCTCAGCAATCATCCATTTCTTAGACTGTATACAAGTTGCCAGAACCCCCTTAACAGCATTGAATTAGATATTGAAAATCGGATTGTTTTTGGAGCAAATCAACATGACCTTATATATGCCTGGGATCTTCGTGGAGGAAGATCATCTTTTGCTTTTCAAAGTCACAAGGAGGTGGGTCACCCACTTCTTACATGTTTGAAAGTATCAACAATGCTAGAGAAAATCACAGCTTTAAAGGAACAGTCAAATATATTACCAAAGGAAATTCACTCTATCAAATTGGATCCTTTTTGCTCTTACCAATTAGCTTTTCACCTCGATGATGGTTGGTCGGGAATTTTGAACCTTAACAGTTTAAATGTGACGCACATGCACTGCCCTCCTCCTCTTTGGATGAGTGGATTTGATGAAGATGTTACCCCTTCATGCTTGAGAAGACCAGCTTGGCTACCCACAAATTCGGTCTATGCAGTGGGGTCTTCATCTGTTAATGGAATCTATCTGCTTGATTTCTTTCCGGACAGAACTTCAGCTTGCCATGTCGATCAAAGTAACTCACCGAATGATATTTCGGTTCAAAGTAAAGGAGTTGGAAAAAACAGATTTATTCCCGTCTCAGAGGCTATTCTGGCTTGTGCTACTCATCCCCAGAATGGCACCATCATTGCTGGTTCTAAGCAATCTACATTACTTATGGTTTCTCAACCGCATCGAACTGATGATGAGGATGCTTGA

Network for GWHGAAEX003856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.960
SRP064423	SRR2545915	Juvenile tuber	7.430
SRP108465	SRR5643513	five period of Gastrodia elata	4.570
	SRR5643514	five period of Gastrodia elata	4.450
	SRR5643515	five period of Gastrodia elata	4.310
	SRR5643524	five period of Gastrodia elata	3.330
	SRR5643525	five period of Gastrodia elata	6.100
	SRR5643528	five period of Gastrodia elata	6.190
	SRR5643658	five period of Gastrodia elata	6.310
	SRR5643659	five period of Gastrodia elata	3.550
	SRR5643660	five period of Gastrodia elata	5.560
	SRR5643661	five period of Gastrodia elata	3.940
	SRR5643662	five period of Gastrodia elata	4.070
	SRR5643663	five period of Gastrodia elata	3.270
	SRR5643664	five period of Gastrodia elata	4.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.970
SRP279888	Gastro	Gastrodia elata tuber	3.39
	Juven	Juvenile tuber	4.63
	Mother_Gastro	Mother tuber of Gastrodia elata	17.12
	Mother_Juven	Mother tuber of Juvenile	5.10