Gene detail

Detail information of GWHGAAEX003857/evm.TU.scaffold_14.215_evm.TU.scaffold_14.214

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|476001823\|gb\|AGI62053.1\|	9.00E-96	SQUAMOSA promoter-binding-like 5 [Erycina pusilla]
Swissprot	tr\|Q7EXZ2\|SPL14_ORYSJ	9.00E-47	Squamosa promoter-binding-like protein 14
trEMBL	tr\|M9QZ71\|M9QZ71_9ASPA	3.00E-96	SQUAMOSA promoter-binding-like 5 {ECO:0000313\|EMBL:AGI62053.1}
TAIR	AT2G42200	7.00E-33	squamosa promoter binding protein-like 9

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	8496728	8509759	+

Transcript Sequence
>GWHTAAEX003857 TTATGAGTTCGAACGCTGCTAAAATAAGTCACCTCACTGTCATTTCTCTTTCTCGAATCGCCTCCTGAGTTCTGACAATCCATCACAGAACACTAATCCGAAGCTGTCGGTTTCACAGAAGCAAAAGGCGGTCTCCTCTTCGTTTTTAGGGTATTTTTCTTCACGCACGGGGTGGAATGGAAAAGAGTTCATCGGCAGCTTTCCAGTGCATCCAGTTCGAGCAGGACATCTTTTTTGGTGATGCGAGCTGTGACGGAAGTGCAACCGTTCAGGCGTTACCGGTGATGAGGCCTCTGGCAGCTGGGAAGAAGACGAAGGGATGCGGGCTTCCGCCGCCAAGGTGCCAGGTGGAAGGGTGTGATTTGGATCTAAAAGGGGCTAAATCTTATTACTGGAGGCATAAGGTCTGCGGGATGCACTCTAAGTCCCCCAAGGTTATTGTTGCCGGACTAGAGCAGAGGTTTTGCCAGCAATGCAGCAGCTCAAAAATATTTACCGAATTCTCGATACAACTGGTTTTTGCGGTAACAATCAACACAAAAAAGATTGCTTCGCCTTTTTTCACCGTCGATTCAGAGCTCGACTGCCTCCTTCACTGTCTGCGATTGCCATCTTGGTTCCACCTCCTAAAAGAATTTGACCAAGGAAAAAGAAGCTGTCGCAGACGTCTTGCAGGACACAATGAACGCCGCAGGAAGGCGCCCCCAGGGCTTCTTCCATCGCGCTATGGCTGTCTGCCATCATTACCTGAACTCAATAACAGGCAAAGAGCCTTCCTCATGGACTTTATGCATCCAAGACCTCCAGATGCTACTACTAAAGACATAATTCTATGGCCAGCTGCGAGAAGCAATGACCGGGAAGCCCCCAACTCACTCAAATTTTCGGGAGCGGACATGAATAACTTGCACCCGGCGCTATTCTCTGCACCTGAACTCGCTCTCGGCGAATGCATTGCAGGTGCGCTTGATTCCACCTGTGCTCTCTCTCTTCTGTCAACCAAGCCGTGGGGTCTGTCTGCGACCTCTGCCGGGCCCAAAAATGAGCGAAGCGCTATTTACATCCCGAGCGCCGAATTCGAGATGGCTCAGCGTGGAGCGAGCGAATGTTTGAGTAGTTCTTGGGTGCCCAAAGAGCTTGTAGCTGGGAGCAGCAGCTCTCATGAAATGTTATTGAGGCAGATTCAGGATGCTGGCGGGAGTTGCCAGTTCTCTGGTGGCCTTGACCTGCCGTCTTTCGGAATCAGGCATTGCTTCAGTGATGTTGGCCCCACCAGCGAGGTTTATGATCAACTTCATGATTTACACTGGCCTCTGTAAACTGAAACGCTTTGCTTTTATGATTTTTGCACTTTTGCTGACTTTTGGCTTTTTACTCTCGGGGCATTTGGTCTTCATGGGGCTTGAGTGATGAAACACACCAATCCTTTTGTTAGCTCTTACTTTTCATTTTGCCATGAACTTCTGTATATGAGAATCATAATCTCTGTTGAAAGTTTATGTTTAATGCTTGTTTTTGCAGTTAGCGTTAACTATTAAAACCC

Network for GWHGAAEX003857

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.13	SBP	56	109	1.10E-18
PF03110.13	SBP	147	174	1.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.000
SRP064423	SRR2545915	Juvenile tuber	20.380
SRP108465	SRR5643513	five period of Gastrodia elata	4.140
	SRR5643514	five period of Gastrodia elata	7.760
	SRR5643515	five period of Gastrodia elata	7.460
	SRR5643524	five period of Gastrodia elata	10.020
	SRR5643525	five period of Gastrodia elata	9.330
	SRR5643528	five period of Gastrodia elata	7.600
	SRR5643658	five period of Gastrodia elata	11.560
	SRR5643659	five period of Gastrodia elata	31.920
	SRR5643660	five period of Gastrodia elata	32.960
	SRR5643661	five period of Gastrodia elata	31.300
	SRR5643662	five period of Gastrodia elata	16.800
	SRR5643663	five period of Gastrodia elata	56.670
	SRR5643664	five period of Gastrodia elata	23.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.060
SRP279888	Gastro	Gastrodia elata tuber	29.45
	Juven	Juvenile tuber	12.21
	Mother_Gastro	Mother tuber of Gastrodia elata	8.84
	Mother_Juven	Mother tuber of Juvenile	7.62