Detail information of GWHGAAEX003860/evm.TU.scaffold_14.220_evm.TU.scaffold_14.224
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209364023|ref|YP_001424629.2| | 1.00E-12 | glycine-rich RNA-binding protein [Coxiella burnetii Dugway 5J108-111] |
| KOG | KOG0118 | 2.00E-54 | FOG: RRM domain |
| nr | gi|672198136|ref|XP_008777247.1| | 5.22E-124 | PREDICTED: UBP1-associated protein 2C-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LKA4|UBA2C_ARATH | 5.00E-55 | UBP1-associated protein 2C |
| trEMBL | tr|M0TZQ0|M0TZQ0_MUSAM | 7.00E-117 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P12410_001} |
| TAIR | AT3G15010 | 2.00E-54 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 8805165 | 8853097 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003860
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 84 | 142 | 2.90E-15 |
| PF00076.21 | RRM_1 | 176 | 243 | 4.60E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12741 | HNRNPA1_3 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.100 |
| SRR2545915 | Juvenile tuber | 28.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.070 |
| SRR5643514 | five period of Gastrodia elata | 36.750 | |
| SRR5643515 | five period of Gastrodia elata | 36.060 | |
| SRR5643524 | five period of Gastrodia elata | 37.130 | |
| SRR5643525 | five period of Gastrodia elata | 29.240 | |
| SRR5643528 | five period of Gastrodia elata | 35.030 | |
| SRR5643658 | five period of Gastrodia elata | 30.410 | |
| SRR5643659 | five period of Gastrodia elata | 42.150 | |
| SRR5643660 | five period of Gastrodia elata | 45.520 | |
| SRR5643661 | five period of Gastrodia elata | 45.660 | |
| SRR5643662 | five period of Gastrodia elata | 49.100 | |
| SRR5643663 | five period of Gastrodia elata | 49.400 | |
| SRR5643664 | five period of Gastrodia elata | 56.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 44.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 50.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 48.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 48.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 42.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 47.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 47.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.87 |
| Juven | Juvenile tuber | 61.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.32 | |
| Mother_Juven | Mother tuber of Juvenile | 57.33 |