Gene detail

Detail information of GWHGAAEX003863/evm.TU.scaffold_14.229

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743862389\|ref\|XP_010943521.1\|	1.56E-127	PREDICTED: uncharacterized protein LOC105061234 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0TTK6\|M0TTK6_MUSAM	5.00E-115	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P25530_001}
TAIR	AT3G57980	3.00E-65	DNA-binding bromodomain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	8989978	8994446	-

Transcript Sequence
>GWHTAAEX003863 CACTAACACTTTTTTTAATTTATATATTGAAAGAAGCTTTTCTCTATATATATATATACAAAACTCGAACCGGATTAAAAGGACCGAATAAATAGATCGGAGGAAAAATAGAAAATCTGGACAAGGGAGAAACGAGCCGAGCCGGACCGGAATTGACAAGGCAAAATTAGGGTTCGAAAAGAAGGGCGGGATGGAGGCGGCGATATAAGGAGGAGGGCGGCGCGGTCGGGCGGCATGGCGAAATCGGAGGATCTGGCCAACGAGATCTGGGGGACGTGGGAGGAGCTTCTGCTGGGCTGCGCCGTGAGCCGGCACGGCACCCGCAGTTGGGACTCCGTGGCCATCGAGATCCAAACCCGAAGCCCCTTCTCCGACCTCCTCACCCCCCAAATCTGCCGCCAGCGATTCTTCGATCTGAAGCGCCGCTTCGAATCCGCACACGATTCCAACCTCGACCAAGATTCGGATCTCTCCGCCGGCGTTCCTTGGCTCGACGAACTCCGCAAGCTGCGCATGGCCGAGCTCCGCCGCGAAGTCGACCGATACGACGTCTCCATCACATCTCTGCAGTCGAAGCTTAAGAACCTGAGAGCGGAGCGGGAGAAGAGCGAAGCGGGCGCGGGGGAGCAGAGTCTGCCGGATCTGAAGAAGGGCGAGGCAACCGATGACAAGGGCGGCGGATCGCCGGAGCCCGTCGGCGATTCCGGCGGATCCTGCAAGGAATCGAACTCCACGGATCCGAAGGCCAAGGGCGCCAAGTCCGGCGAACGAGAGGAGACGGAGCCGGAGAAGACGGCCGCCGCAGCCCAAGAAACAATGGCCCGGCCGGCCCGCGAAGCTTCCTGCAACGGAAGCTCCGAGACAGCAGATATGCCTCCTCCGTGCCTGGAGAGCAGCGACGTGCAGAGCTCCGTCAGCCTGTCAAGACGCCGCAGGGGAAGGCTGCGCAAGCCCATGGCGGACGAGACGGAGGCTGTGTCTCCTGTTGCAGCTCTTGCGAACCCCATCATCGCCCCTCAATCGCAGCCCTTGGCCTCCTTCCTCCACACCGTCCGATCCAGCAAGCACGGCGCCATCTTCTTGCGCCGGCTCCAGGCCCAGGAAAGCGGGCGATACCGGAGAGTGATAAGGAAGCACGTGGACCTGGAGATGGTGCGGGGGCGGCTGGAGCGAATGGGAGCGGAGTACTCGATCGCGGAATTCTTCCGCGATCTGCTCCTCCTCTGCAACAACGCCATCGTCTTCTTCCCCAAAGGCTCTCCGAACTCCGCCGCAGCCGTCCATCTACGGCAGATGGTGACGGCGGAGATGGCCGCCGTCCTGCCGAAGCGGGCCCGCCCGATGCTGGCCCCAGCCGCCTCCCTCCCGCTTCGAAAGCCCCTCACCAAATTAAAGCTCGACTCCGATCTGAGCAGCAATCCGCTCCCGAAGAAGAGCCGCTCGCCAGGATCTCTCATCGCCTGCCGGAAGCGCACCTCCGTATCCAAGCCCCCGGCCGCCGCCGCCGATTCCGATTCCGATTCCGACGGCAAGACGAAGGAGAAGCCCAAGCTGTCGGGGGCGAGGGGCTTGCGGACCAGCAAATGCCGCGGCGGCTCCGGCTCGAAGGGCTCCAGGCTGGGCCCGATCGCTGACGATGCCCAGACCCCGGAAACGAAGGCCGAAAAGAGGACCAACCCGACGACGCCGAAGAAGCGAAACGCCGCCAACTTTCTCAATCGCCTCAAGGGCTCGGCTGCGGAATCGCTGCTGAACTCGCTGAAGAAGAGGGGCGGGGGGAAGGGAGAGGGGAAGCGCAGCGTCGGACGCCCCCCCAAAAAGACGGCCACCCCCAGTCCACCGCCCGCCAAGAGGCTCAAGATCGAAGCCCCGTCTCTCCGACGCCCGCCGCCGCCGCCTCCGCCGCCGGTGAAGAGGAGAGGGAAGAAGTGAAGCGATCGGGGGCTGATAGGGTTGTAAATTATAATGCCTTTTGTATCGATTTTTATTTTTAACCTTTTTTATGTTTCTTGTTTATTAGCTGTTTAAAGATTGGAATTTTAGAGAGCGGGATTTTACATCTTTTTTTTTATTAATTTTTTGCTTATTGGCGCTATACATCTATTCATAATAGGGTTATCAAAGTTTTTCTTTGTATTTTCTTTTATATTTAAATTGATGTTTTCTTAAAAAAT

Network for GWHGAAEX003863

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	12	60	2.10E-08
PF00439.24	Bromodomain	275	349	1.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.440
SRP064423	SRR2545915	Juvenile tuber	6.020
SRP108465	SRR5643513	five period of Gastrodia elata	23.320
	SRR5643514	five period of Gastrodia elata	19.130
	SRR5643515	five period of Gastrodia elata	18.970
	SRR5643524	five period of Gastrodia elata	19.290
	SRR5643525	five period of Gastrodia elata	37.620
	SRR5643528	five period of Gastrodia elata	24.960
	SRR5643658	five period of Gastrodia elata	36.000
	SRR5643659	five period of Gastrodia elata	26.620
	SRR5643660	five period of Gastrodia elata	28.880
	SRR5643661	five period of Gastrodia elata	29.700
	SRR5643662	five period of Gastrodia elata	27.060
	SRR5643663	five period of Gastrodia elata	21.210
	SRR5643664	five period of Gastrodia elata	29.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.810
SRP279888	Gastro	Gastrodia elata tuber	16.94
	Juven	Juvenile tuber	21.71
	Mother_Gastro	Mother tuber of Gastrodia elata	55.17
	Mother_Juven	Mother tuber of Juvenile	38.96