Detail information of GWHGAAEX003864/evm.TU.scaffold_14.231
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|440684238|ref|YP_007159033.1| | 5.00E-77 | Delta-15 acyl-phospholipid desaturase [Anabaena cylindrica PCC 7122] |
| nr | gi|573920381|ref|XP_006647793.1| | 0 | PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2-like [Oryza brachyantha] |
| Swissprot | tr|P48631|FD6E2_SOYBN | 0 | Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 |
| trEMBL | tr|J3LGG5|J3LGG5_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G37320.1} |
| TAIR | AT3G12120 | 0 | fatty acid desaturase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 9132877 | 9134046 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003864
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11960.7 | DUF3474 | 30 | 71 | 1.50E-09 |
| PF00487.23 | FA_desaturase | 90 | 350 | 5.00E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10256 | FAD2 | Metabolic pathways | map01100 |
| Fatty acid metabolism | map01212 | ||
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006629 | Biological Process | lipid metabolic process |
| GO:0016717 | Molecular Function | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.700 |
| SRR2545915 | Juvenile tuber | 5.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.010 |
| SRR5643514 | five period of Gastrodia elata | 44.130 | |
| SRR5643515 | five period of Gastrodia elata | 27.480 | |
| SRR5643524 | five period of Gastrodia elata | 38.200 | |
| SRR5643525 | five period of Gastrodia elata | 56.160 | |
| SRR5643528 | five period of Gastrodia elata | 122.810 | |
| SRR5643658 | five period of Gastrodia elata | 51.840 | |
| SRR5643659 | five period of Gastrodia elata | 10.620 | |
| SRR5643660 | five period of Gastrodia elata | 9.540 | |
| SRR5643661 | five period of Gastrodia elata | 15.130 | |
| SRR5643662 | five period of Gastrodia elata | 17.720 | |
| SRR5643663 | five period of Gastrodia elata | 16.310 | |
| SRR5643664 | five period of Gastrodia elata | 20.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 52.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.81 |
| Juven | Juvenile tuber | 5.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 96.97 | |
| Mother_Juven | Mother tuber of Juvenile | 17.96 |