Detail information of GWHGAAEX003869/evm.TU.scaffold_14.240
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2234 | 2.00E-56 | Predicted UDP-galactose transporter |
| nr | gi|567859502|ref|XP_006422405.1| | 1.03E-173 | hypothetical protein CICLE_v10028748mg [Citrus clementina] |
| Swissprot | tr|F4JN00|CSTR4_ARATH | 6.00E-170 | CMP-sialic acid transporter 4 |
| trEMBL | tr|A0A067FQF7|A0A067FQF7_CITSI | 4.00E-174 | Uncharacterized protein {ECO:0000313|EMBL:KDO68385.1} |
| TAIR | AT5G41760 | 2.00E-56 | Nucleotide-sugar transporter family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 9598651 | 9619920 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003869
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04142.14 | Nuc_sug_transp | 128 | 420 | 4.10E-55 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0090481 | Biological Process | pyrimidine nucleotide-sugar transmembrane transport |
| GO:0015165 | Molecular Function | pyrimidine nucleotide-sugar transmembrane transporter activity |
| GO:0000139 | Cellular Component | Golgi membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.100 |
| SRR2545915 | Juvenile tuber | 14.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.450 |
| SRR5643514 | five period of Gastrodia elata | 8.950 | |
| SRR5643515 | five period of Gastrodia elata | 9.120 | |
| SRR5643524 | five period of Gastrodia elata | 9.820 | |
| SRR5643525 | five period of Gastrodia elata | 11.810 | |
| SRR5643528 | five period of Gastrodia elata | 11.170 | |
| SRR5643658 | five period of Gastrodia elata | 14.330 | |
| SRR5643659 | five period of Gastrodia elata | 11.280 | |
| SRR5643660 | five period of Gastrodia elata | 13.480 | |
| SRR5643661 | five period of Gastrodia elata | 11.410 | |
| SRR5643662 | five period of Gastrodia elata | 10.230 | |
| SRR5643663 | five period of Gastrodia elata | 13.510 | |
| SRR5643664 | five period of Gastrodia elata | 10.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.93 |
| Juven | Juvenile tuber | 8.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.07 | |
| Mother_Juven | Mother tuber of Juvenile | 10.19 |