Detail information of GWHGAAEX003873/evm.TU.scaffold_14.245


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|317051082|ref|YP_004112198.1|2.00E-144glutamyl-tRNA synthetase [Desulfurispirillum indicum S5]
KOGKOG11490Glutamyl-tRNA synthetase (mitochondrial)
nrgi|743821766|ref|XP_010932120.1|0PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Elaeis guineensis]
Swissprottr|Q9FEA2|SYE_ARATH0Glutamate--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBLtr|M0TTJ9|M0TTJ9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P25460_001}
TAIRAT5G640500glutamate tRNA synthetase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001297550139786452+
Transcript Sequence

Network for GWHGAAEX003873

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00749.20tRNA-synt_1c523696.20E-101
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01885EARS, gltX Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Porphyrin and chlorophyll metabolismmap00860
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0043039Biological ProcesstRNA aminoacylation
GO:0006424Biological Processglutamyl-tRNA aminoacylation
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0008270Molecular Functionzinc ion binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
GO:0004818Molecular Functionglutamate-tRNA ligase activity
GO:0000166Molecular Functionnucleotide binding
GO:0000049Molecular FunctiontRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms88.090
SRR2545915Juvenile tuber45.110
SRP108465SRR5643513five period of Gastrodia elata36.100
SRR5643514five period of Gastrodia elata35.720
SRR5643515five period of Gastrodia elata35.510
SRR5643524five period of Gastrodia elata41.360
SRR5643525five period of Gastrodia elata66.490
SRR5643528five period of Gastrodia elata68.410
SRR5643658five period of Gastrodia elata81.620
SRR5643659five period of Gastrodia elata17.540
SRR5643660five period of Gastrodia elata20.480
SRR5643661five period of Gastrodia elata20.120
SRR5643662five period of Gastrodia elata23.320
SRR5643663five period of Gastrodia elata19.980
SRR5643664five period of Gastrodia elata22.190
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_146.330
SRR6049655Rhizomagastrodiae_C368-T10_good_131.530
SRR6049656Rhizomagastrodiae_C368-T07_good_139.360
SRR6049657Rhizomagastrodiae_C368-T07_good_168.140
SRR6049658Rhizomagastrodiae_C368-T04_good_187.810
SRR6049659Rhizomagastrodiae_C368-T04_good_1102.680
SRR6049660Rhizomagastrodiae_C368-T01_good_163.910
SRR6049661Rhizomagastrodiae_C368-T04_good_170.580
SRR6049662Rhizomagastrodiae_C368-T01_good_134.460
SRR6049663Rhizomagastrodiae_C368-T01_good_143.520
SRR6049664Rhizomagastrodiae_C368-T10_good_126.030
SRR6049665Rhizomagastrodiae_C368-T10_good_126.030
SRP279888GastroGastrodia elata tuber 23.30
JuvenJuvenile tuber26.13
Mother_GastroMother tuber of Gastrodia elata 40.86
Mother_JuvenMother tuber of Juvenile 56.70