Detail information of GWHGAAEX003876/evm.TU.scaffold_140.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269839716|ref|YP_003324408.1| | 1.00E-61 | glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798] |
| nr | gi|695045433|ref|XP_009410508.1| | 0 | PREDICTED: mannan endo-1,4-beta-mannosidase 8 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q2RBB1|MAN7_ORYSJ | 0 | Mannan endo-1,4-beta-mannosidase 7 |
| trEMBL | tr|M0TJN7|M0TJN7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P22010_001} |
| TAIR | AT5G01930 | 8.00E-175 | Glycosyl hydrolase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000138 | 152762 | 179974 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003876
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00150.17 | Cellulase | 19 | 316 | 2.00E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K19355 | MAN | Metabolic pathways | map01100 |
| Fructose and mannose metabolism | map00051 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.480 |
| SRR2545915 | Juvenile tuber | 12.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.330 |
| SRR5643514 | five period of Gastrodia elata | 28.000 | |
| SRR5643515 | five period of Gastrodia elata | 35.640 | |
| SRR5643524 | five period of Gastrodia elata | 32.210 | |
| SRR5643525 | five period of Gastrodia elata | 14.670 | |
| SRR5643528 | five period of Gastrodia elata | 10.860 | |
| SRR5643658 | five period of Gastrodia elata | 8.690 | |
| SRR5643659 | five period of Gastrodia elata | 8.740 | |
| SRR5643660 | five period of Gastrodia elata | 7.350 | |
| SRR5643661 | five period of Gastrodia elata | 9.480 | |
| SRR5643662 | five period of Gastrodia elata | 8.140 | |
| SRR5643663 | five period of Gastrodia elata | 9.910 | |
| SRR5643664 | five period of Gastrodia elata | 3.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.92 |
| Juven | Juvenile tuber | 3.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.50 | |
| Mother_Juven | Mother tuber of Juvenile | 11.54 |