Gene detail

Detail information of GWHGAAEX003879/evm.TU.scaffold_140.10

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|226309673\|ref\|YP_002769567.1\|	3.00E-19	methionyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
KOG	KOG2241	7.00E-112	tRNA-binding protein
nr	gi\|672137048\|ref\|XP_008792236.1\|	1.03E-156	PREDICTED: probable methionine--tRNA ligase isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9SVN5\|SYM_ARATH	3.00E-41	Probable methionine--tRNA ligase
trEMBL	tr\|M0SJT4\|M0SJT4_MUSAM	8.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P00170_001}
TAIR	AT2G40660	7.00E-112	Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000138	324371	375643	+

Transcript Sequence
>GWHTAAEX003879 ATTTATTTCATATAACTAAGTGAGAAAATTTATAGGGTGACTTGGAGGTGCTGGCTGGTTCCACTGCGTGCTGAGGACTGGGGAATGACTTTGAACATGGAGGCCACGGGCTCCGGAGAATTCTCCACCAAAAGGAACAAGGCCATCATTCACGCTCTTTGTAAGCGTTTTTCCCTCAATCAGGAGAAAATTCTTATCGAGATTTCTGGGTCTCTTGATATTATAAACCTAGTCGCATACTTTTTCCAGTCTTCAGGAAATGACATTTCTTTCTCAGATAATCAAATTGAGGAGATGAAATGGGCAGCCTTTGCTAGCAATATTTCTGAAAGAAAAGATGCTTGCCATGCTTCTCTTAAAGATTTGAATGAACATTTAACCCTAAAGTCCGTTCTTTTGGGAGGATTGAAAACATCAGTGGCTGATGTTATTGTGTTTTCTGCTTTGCATGATTTTGTGAGTCATCTCACTAATGAAGAAGCTCAGAAGTACCCAAATGTTATGAGATGGGCAGACTATATTCAGAACAAAGAAGATTTTGGTGGAGCTTTTGATTTGATTGTCATCAACAAACTCCCATTTGGACATTTTCAGTCAACAGGCTTGAAAGATGCCAGTCAAACAACAAACTCTGTGAATGATCTACGTGAGGCTGCTGCTAATGATAAAGTCTCAATTAATTCAAAGAACGGAAGTAAAGGTAATAATGTGAATGATTCTCTAGAACAAACTAAGAAAAGCACAGAGGAGAAAAAGAAACCTTCAGATAAGGAGTTATCTGAGAAAGATACAGAATCTCCTATTACTCTTCTTAATATACAAGTTGGCCTTATTCTTAAGGCATGGAAGCATCCATCTGCTGACAGCTTGCTTGTTGAAGAGATAGATTTGGGAGACAACAACCAACGCCAAGTTGTTAGTGGACTTGCCAAGTATTATAGTCCTGATGACCTTATTGGTCGGCATGTGGTTTTAATTACAAATGTAAAGCCAGGGAAACTGCGTGATGTGATGTCCTCTGGGTTGGTGCTTTGTGCTTCAAATCAAGAACTTACAACTGTGGAGCCCATAATTCCTCCAGAAGGTGCCAAAATTGGGGAGCGTATTTCATTTTCAGGGTTTGATGGGAAACCAGAAGATGTTCTGAATCCGAAGAAGAAGCAGCTGGAAAAGATCACTCCGCATATGTACACGGATGAGGTTGGAACTCCAAGATACAAAGGGTTACTGTTCATGACTAGTGCCGGGCCTTGCAGTTCTTCCATTCCCAATGCTGCCATCAAATGATCGCGACATCATTCCATACGGACTACATGGAAGCGTGGGCAGCATGCCATTAACCATTTGCAGGACAACAATATTGCCACCCCACCTCAGCCAACATAAGTAAGCCAACAAACCACCGCTAGAAGAATAAGCCCCAATGACAGCCGTATGGAAAACCAGCCTCCCAAAAGACAAATGCCAGGACAACTCCTTAATTACATTTTCATAAAATAAACTGCCAAGCCACATAGACCGCATTATTTACATACCAAATAATCATACCGCATTATTTTATTCCAAAGAAAATATTTATTTAAATTTAATACTTTCGATTAGCAGAACTAATTATCTGCTTTTGTCTATTGGTAGCAAAACTAATTATTTAGATTAAAAGTTTTGCTTACAGTTCTGAGTTTTATACGTTATATCAAATTTTAAATTGGAAAATGCAAGGCTCTGTGCGTTTATTTTCTTACTTGCCTTAAGTCC

Network for GWHGAAEX003879

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01588.19	tRNA_bind	245	339	3.20E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000049	Molecular Function	tRNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.750
SRP064423	SRR2545915	Juvenile tuber	51.060
SRP108465	SRR5643513	five period of Gastrodia elata	30.930
	SRR5643514	five period of Gastrodia elata	33.940
	SRR5643515	five period of Gastrodia elata	30.160
	SRR5643524	five period of Gastrodia elata	33.410
	SRR5643525	five period of Gastrodia elata	18.470
	SRR5643528	five period of Gastrodia elata	19.030
	SRR5643658	five period of Gastrodia elata	14.880
	SRR5643659	five period of Gastrodia elata	32.420
	SRR5643660	five period of Gastrodia elata	35.190
	SRR5643661	five period of Gastrodia elata	32.950
	SRR5643662	five period of Gastrodia elata	33.430
	SRR5643663	five period of Gastrodia elata	38.620
	SRR5643664	five period of Gastrodia elata	32.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.190
SRP279888	Gastro	Gastrodia elata tuber	36.30
	Juven	Juvenile tuber	45.02
	Mother_Gastro	Mother tuber of Gastrodia elata	25.26
	Mother_Juven	Mother tuber of Juvenile	32.60