Detail information of GWHGAAEX003884/evm.TU.scaffold_140.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0768 | 0 | Mitochondrial carrier protein PET8 |
| nr | gi|743787881|ref|XP_010922522.1| | 0 | PREDICTED: mitochondrial substrate carrier family protein C [Elaeis guineensis] |
| Swissprot | tr|Q94AG6|SAMC1_ARATH | 4.00E-33 | S-adenosylmethionine carrier 1, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|M0T2Q5|M0T2Q5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P29310_001} |
| TAIR | AT2G35800 | 0 | mitochondrial substrate carrier family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000138 | 858627 | 904838 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003884
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00153.26 | Mito_carr | 505 | 586 | 1.20E-11 |
| PF00153.26 | Mito_carr | 599 | 676 | 3.10E-06 |
| PF00153.26 | Mito_carr | 685 | 773 | 9.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.970 |
| SRR2545915 | Juvenile tuber | 13.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.960 |
| SRR5643514 | five period of Gastrodia elata | 13.420 | |
| SRR5643515 | five period of Gastrodia elata | 12.890 | |
| SRR5643524 | five period of Gastrodia elata | 12.130 | |
| SRR5643525 | five period of Gastrodia elata | 11.580 | |
| SRR5643528 | five period of Gastrodia elata | 9.280 | |
| SRR5643658 | five period of Gastrodia elata | 10.920 | |
| SRR5643659 | five period of Gastrodia elata | 18.120 | |
| SRR5643660 | five period of Gastrodia elata | 18.990 | |
| SRR5643661 | five period of Gastrodia elata | 20.470 | |
| SRR5643662 | five period of Gastrodia elata | 20.080 | |
| SRR5643663 | five period of Gastrodia elata | 21.160 | |
| SRR5643664 | five period of Gastrodia elata | 21.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.61 |
| Juven | Juvenile tuber | 21.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.18 | |
| Mother_Juven | Mother tuber of Juvenile | 12.83 |