Gene detail

Detail information of GWHGAAEX003885/evm.TU.scaffold_140.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|194333519\|ref\|YP_002015379.1\|	2.00E-51	NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]
KOG	KOG1502	5.00E-173	Flavonol reductase/cinnamoyl-CoA reductase
nr	gi\|743788220\|ref\|XP_010922610.1\|	0	PREDICTED: cinnamoyl-CoA reductase 1 [Elaeis guineensis]
Swissprot	tr\|Q9S9N9\|CCR1_ARATH	5.00E-80	Cinnamoyl-CoA reductase 1
trEMBL	tr\|M0SQ37\|M0SQ37_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P18740_001}
TAIR	AT5G58490	5.00E-173	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000138	964455	975958	-

Transcript Sequence
>GWHTAAEX003885 GTTGAATTTGCCACAAATTTGGCAGTGTATAAATTCTTGGTATGAATCAATATTCTGATGGATGGGACTTTGGCCTGTATTGTTATATGAAGGAGCACGGTAACCACGTCCCCGATTAGAACGACCACAGCCCCTGCCCTGGGATGCAGTGAGGGCAGAAACCTATTTGATCAAGTGAAGCTACTGGAAATTTTGAAGAGTTTCAGTTTTGAGGTTAATTTCTTCACTGCAGAGAAGGGAATAAAATTCGTCCAAACAGAGGATTCAGGCCTTGTTTGAATTGCTGATTTGAAAGACTGGTATAAGGAAGGAAGACTACATAGGGTATAGAATATGATGTCTTCAAGATTAAGCTTTGAACTGGAGACAGAGATTTGGTTGATTTTGGCATTGACATCAGTTAAGCAATATGATAGGGTTTTGCCATGCATTGAGACAAAAAAGCTCATTCTTCAACAATATGATTCTCGACCGATTTATTGATTGAAATCAGTATTCAAGAGTAGTTCATATCTCGGAGCAGGTGTTAAAGATGAATGACGTGGGGGAGGATGGGAGCTGAAATTATCGAGAATAGGGCAACAATGAGATTTTGATCAATTAACAACCATCTATGATATGAAAGATTATGTATGGCGGATCCGCTGGCTTTATGGATGAATCGGTTTGGACAGAAACAGAGCCATTTAAATGTCTGAACAACTCATTTGTGGTGAATATCTTGTCGATCTGAGCACGCCAAAGAGAATAGTTCTCCGTGGTGAGGGGAGTGGTGCGTTGCTCATGAGAAATTTTTGAGTCGGATTAGGGATTTGGAGATCGTTGTTGCACAATTGACCAGCGAATTGGTCGTCGGGGAGTGGAGGAGTCCGCCATTTGAGGGGCGATTAAGCTATTAGCTCTAATACCGTGTAGATGGAGAGCCACGAGAGAAGAATGACAAAAGAAAAGATGAGAGGAAGAAACGGTAATTTTATTCATGTATGTGAAATGAGTTACGGGGTTGAACCGGTAATATCTACAGGTGCCGGTTAGTCGGTTACCAGTACCAAAACATCTCCAGTGGCGCAGCAGCGCGAGTCTTCGTTGTTGTCTGCGGCAGCAGTGGCTCCACGATGTCGTCTATCAGAAAAACCGTCTGCGTCACCGGCGGAAGTGGCTTCATCGGATCCTGGCTCGTCCGGCTCCTCCTCGACCGCGGTTACACTGTCCATGCCACCGTCCAAAATATCCAGGACGATGGCGAGACAAAACACCTCGAAGACCTAGACGGCTCTTCCTCTCGTCTCCGCTTATTTCAGATGAACCTCCTCGATCCTGCCTCCATCGCCGCTGCCGTCCTTGGCACCACGGGGGTCTTTCATCTTGCTTCTCCTTGCGTCGTTGATCGCGTTCACGATCCTCAAGGAGAGCTTCTTGATCCAGCGGTAAAGGGCACGCTCAACGTTCTCCGAGCGGCACATGATGGTGGCATTAACCGTGTGGTGGTTACCTCATCTATCTCGGCGATCATTCCCAGCCCCGGATGGCCGGCGGACATGGTCAAGGACGAGAGTTGTTGGACAGATCTTGACTATTGCCGGCAGAACGGGATCTGGTATCCGATTTCTAAGACAATGGCTGAGAAGCATGCGTGGGACTTTGCCAAGGAGAATGGGCTGGATTTGGTGGTGCTGAACCCAGGAACTGTTATGGGCCCCATTATTCCGCCAAGCATCAACGCCAGCATGCTTATGCTTCTTCGCCTTCTACAAGGGTGCACTGAGCATTATGAGGATTTTTACATGGGATCTGTTCATGTCAAAGATGTCGCGCTTGCACATATTCTTTTGTATGAAAATTCTTCTACTTCTGGGAGGCATCTCTGTGTTGAAGGCATAATTCATTACAGCGACTTTGCCTCCAAAGTTGCAGAACTTTACCCAAAATATAATCTGCCAAAGTTTCCCAAGGATACCCAGCCCGGACTGTTGAGGGTCCAGAGTCCTTCAAAAAAACTTATTGACCTGGGCATGCAATTCATCCCTCTTGAGGAAATCATCAAAGATTCGGTGGAGAGCTTGAAGAACAAGGGGTACATCTCGTAAATGACTGTTTTAAATTTCATCAGTTCTCTATTCAAGGTTTTTTAGAGGAACTTTTGGGGGTAGAAGAGACCCATCAAACTTCAGAACTTAGCCAGTCTTTTTATTGAATGTGAAATGAATGAGTGCTTAGCTCTGTTTACTTTTGATCAGCAAGGAAAATGATATGCAAAATATACTGTCACTGCAATGAACTTAACTGCAATTGTAGTCTGGCCAAAGGATTCACAAGTGGTTTGACTGGTGGCACTCAAAGCTCATGCGAGCAAAATTATATGGGAGCCCTATTTTTTAATATTTAAAGCAAATTTACTAAAATTATGGGA

Network for GWHGAAEX003885

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01370.20	Epimerase	8	244	5.00E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity
GO:0050662	Molecular Function	coenzyme binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.580
SRP064423	SRR2545915	Juvenile tuber	47.650
SRP108465	SRR5643513	five period of Gastrodia elata	42.220
	SRR5643514	five period of Gastrodia elata	43.860
	SRR5643515	five period of Gastrodia elata	41.400
	SRR5643524	five period of Gastrodia elata	42.730
	SRR5643525	five period of Gastrodia elata	34.860
	SRR5643528	five period of Gastrodia elata	27.040
	SRR5643658	five period of Gastrodia elata	36.280
	SRR5643659	five period of Gastrodia elata	40.120
	SRR5643660	five period of Gastrodia elata	37.200
	SRR5643661	five period of Gastrodia elata	41.820
	SRR5643662	five period of Gastrodia elata	41.470
	SRR5643663	five period of Gastrodia elata	44.680
	SRR5643664	five period of Gastrodia elata	40.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	58.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	66.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	64.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.570
SRP279888	Gastro	Gastrodia elata tuber	49.84
	Juven	Juvenile tuber	39.82
	Mother_Gastro	Mother tuber of Gastrodia elata	23.81
	Mother_Juven	Mother tuber of Juvenile	19.90