Gene detail

Detail information of GWHGAAEX003886/evm.TU.scaffold_140.23

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|488775371\|ref\|YP_007944787.1\|	2.00E-49	DNA polymerase I [Desulfotomaculum gibsoniae DSM 7213]
KOG	KOG0950	0	DNA polymerase theta/eta, DEAD-box superfamily
nr	gi\|743870107\|ref\|XP_010905963.1\|	0	PREDICTED: DNA polymerase I A, chloroplastic-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6Z4T5\|POLIA_ORYSJ	0	DNA polymerase I A, chloroplastic (Precursor)
trEMBL	tr\|U5D1U8\|U5D1U8_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN19576.1}
TAIR	AT1G50840	0	polymerase gamma 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000138	1156249	1159989	+

Transcript Sequence
>GWHTAAEX003886 GCCGCGCCTCTTCTACAAGATCAAGTTTGAAGAAAATCGTAGGGCCTGCGTGGCAAATACAGTCTGATCCGATGCACAAAAGGCTAAAACCCTTTCTTCGCCTCCTGCTCGGGGTTTCATACCTCCGAGCTCGAACCCTGTCTCGCTCTCCTTCCCGTACAGCAATGGATGTTTTTGTTCAGCGGGGACTCTTCTACTCTCTCAGGCTTTCCACTTCTTGCCACCTGGATGAGCAGGGCTCAGTCTTCTCGCCGTTTAACTGGAACAAGGCTCCATATCGGAAAGCTACTGCTTGCTGTTCTCAGGTACAATTTCCATTATCTGGCATAAATGCCTTGCAGAAACGTCACAAAGGAAGTTTGGATAAAAGTGTGAATTTTACGTTACAAGCTCGTCTATCGTCTGTAATAAGTAGTGTTAGAACAGATTCCTCAAAGACATCAACTAAATCTGAAGAGGCATGGCGAAGAGAAGCTGACATGTTGAATGCTGAAAAAAAAAGAGCGCAAGGGTCGCCTTATGCGACTGAAGCTAACGCTAGAATATTGGCTGTTGAAACAGAAAATGCTCAAATAGAGTCTCGAGATGTTACCCAAGCTAAGGAAAATGACACCAGAAGCGTGGATCCGTCTCTTCAGAAATGTGCCCCTCTATCGACACTTTCAATACTTGAGAAAAATTCTGAAATAAATAGCATTCCCAAAGAGCACAAGCATAATAGAGTCACTAAACTATATGACAAAGGCAGCGAGGAACACAAGCAAAGACTTACAAAACTATACGACAAAGCCCTAGTGGTTTGTGATCTCAGCACTGCTAAGGAAACTGTTCAAAAGCTTACTACAATGTACAGGAATCTTGTCCATGCTTGTGACACCGAGGTGGCAAAAATTGATGTTAAACAGGAGACTCCCGTTCACCACGGGGAGATTACTTGCTTTAGCATCTATTCTGGGCCTCGGGCAGACTTTGGTGATGGGAAATCATTCATATGGGTGGATGTGCTTGATGGTGGGCATGATGTTTTGATGGAGTTTGCTACCTTTTTTGAAGACCCAAATATTAAAAAGGTTTGGCATAACTATAGCTTTGATAGCCATATTTTGGAAAACCATGGCATAAAAGTTTCTGGGTTCCATGCTGATACCATGCATCTAGCTAGGCTTTATGATTCTTCAAGACCTGATGGTGGGTATTCACTTGAATCCCTTACTAGTGATTTGAAGGTCATGTTTCACGCAGGATTTCATGTTGTTGATGATTTTGAATTTACTGCCAAGTTATCAATGAAGTCATTATTTGGGAAGGGAAAGATGAAGAAAGACGGTTCCATAGGTCAACCCATCACAGTTGCTCCTGTGGAACTTCTTCAAAGAGAAGAGCGTATATTGTGGATTTGCTATTCTGTTTTGGATTCTATAAACACGCTTAGACTTTACGAAAGTTTAAAGGCAAATTTGTTGTCAAGGAATTGGTATTTTGATGGCGTTCAGAAAGGTTCAATGTATAATTTTTATGAAGAATATTGGCGTCCGTTTGGCAGTCTATTAGTTAATATGGAAGCACAAGGACTGCTTATTGATAGAGCGTATCTTTCGGATGTGGAAAAGGTTGCTGTCTCCGAACAAGAAATAGCTGCTACCAGATTCCGTGACTGGGCATCCAAGTATTGTCCTGATGCAAAATACATGAATGTTGGAAGTGATGTTCAGATCCGTCTGCTATTTTTTGGCGGAACCCTTAACAGAAATAATAAAACACAAATGTTGCCGGAGTCCAAAACGTTCAAAGTGCTCGACACTGAACATGTTCTCCGAGATGGAGAGAAGAAATCAAAATATCGCAATATTACTCTGCAGTCTTTTGGTAAACAGATGCAAGCAGAGATTTATACAGCTTCTGGATGGCCATCAGTTAGCGGTGATGCTTTGAAAAACTTTGCTGGAAAGATATTACCAGGCAACACGTATTTGTTGAATGATAGATTAAAATCAAACTCCAATAGTGAGCAGACTGCATTCGAGAGATCTCTTTATGGAACAGCTTATGTTGCTTTTGGACAGGGCAAGGAAGGGAAAGAGGCATGCCGTGCTATAGCAGCTCTCTGTGAAGTTTGTTCTATTGACTCCTTGATATCAAATTTCATACTTCCTTTGCAAGGAACTCGCATATCAGGTAAAAATGGGCGTATTCATTGTTCCCTAAATATAAACACAGAAACGGGACGCTTGTCAGCGAGAAGGCCAAATTTACAAAATCAACCTGCTTTAGAGAAGGATCGTTACAAAATTCGGCAAGCCTTTATTGCTGAACCAGGAAACACGCTGGTTGTTGCTGATTATGGACAACTGGAACTAAGGATTCTGGCTCATCTTTCAAATTGTCAGAGTATGTTGGAAGCCTTCAAAGCTGGTGGAGATTTTCACTCGAGAACTGCTATGAATATGTATACGCATGTGCTCAAGGCTGTAGAGGATAAGACAGTGCTTCTTGAATGGCATTCTCAAAAGGGAGAAGAGAAGCCGCCTGTTCCTTTGTTGAAGGATGCTTTTGCTGCTGAAAGGAGAAAAGCAAAAATGCTTAATTTTTCCATTGCTTACGGCAAAACTCCTCAGGGGCTCTCAAGAGATTGGAAGGTGTCACTCAAGGAAGCCAAGGAAACAGTATCGTTATGGTACAAAGAGAGAAGAGAAGTATTAGAATGGCAAGAAAAACGCAAAGAGGATTTGGTAACTAATCATTGTGTTTGTACTCTGCTTGGTCGTGAGCGCAAGTTTCCTTCTTTAGAAAATGTGAGTCAAGCTCAGAGAGGTCACATTGAACGAGCTGCAATTAATACACCAGTTCAGGGTAGTGCAGCCGATGTTGTTATGTGTGCTATGCTTGAGATAGAAAGGAATACTCAGTTGAAGGAACTTGGGTGGAAGTTACTTTTGCAGATTCATGATGAAGTGATGCTTGAAGGCCCTACTGAGTCAGCAGAGATTGCAAAGGCGATAGTTGTTGAATGCATGTCAAAACCCTTCAGAGGAATAAACATACTTAATGTTGATCTTGTTGTTGAAGCTAAGATTGCTCAGAATTGGTATGCTGCCAAGTAGTCAGTTGGTCACTCCTATGCTAGCCATATCTTTCAGGTGACTGACTCTCCTTTGATTATTTTGATTGCCAATGGAAAGTTGATATGACCATGTGATGGTAGCGGTTGCAGCTGCATGGTGTTGAGCCACATGAAACGATGTCTGAGCCATCATTGCAATATTGTGGATGAGTTCAACTGTGTTAAGAGGATATTTAGATTATTGGTTCTGGGATGATTTAGGGTATGATAAATTTATATGAGCATTTTTTTACGGCAACGTGTTGTAATATCTGAATGAGTAACATAAGTTATTGTTTTTGTAGAACCAGAGTTACTGTTATAGAGCGGGCCTTTGTATTCTTTTACTTGCTCCATAATGAAGTTTCATTGCAGTACGCTGTCTATACATTCCTGAGCTTTCAATGCAAGCGCTCATATTTTGAAGGAGAATGTAAGCATTACAAATTAATATTATCTTTCCTAAGCTCAATAAATGGTAATTGAAAATGCAAACCAACTTTCAAGTTTAATCTCATTTCAGTTGAACCCTCCCCTCCGTTCAGAGATCGCGCTCAGTTTTTAAGCATAATTATATTTAAGATCATTCATTAAACCCAAGTAATCAAGCATGAGGCCTCAACTCTATGAATAGTACTTCC

Network for GWHGAAEX003886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01612.19	DNA_pol_A_exo1	249	382	2.80E-09
PF00476.19	DNA_pol_A	675	1006	3.60E-75

Protein Sequence

>GWHPAAEX003886
MHKRLKPFLRLLLGVSYLRARTLSRSPSRTAMDVFVQRGLFYSLRLSTSCHLDEQGSVFSPFNWNKAPYRKATACCSQVQFPLSGINALQKRHKGSLDKSVNFTLQARLSSVISSVRTDSSKTSTKSEEAWRREADMLNAEKKRAQGSPYATEANARILAVETENAQIESRDVTQAKENDTRSVDPSLQKCAPLSTLSILEKNSEINSIPKEHKHNRVTKLYDKGSEEHKQRLTKLYDKALVVCDLSTAKETVQKLTTMYRNLVHACDTEVAKIDVKQETPVHHGEITCFSIYSGPRADFGDGKSFIWVDVLDGGHDVLMEFATFFEDPNIKKVWHNYSFDSHILENHGIKVSGFHADTMHLARLYDSSRPDGGYSLESLTSDLKVMFHAGFHVVDDFEFTAKLSMKSLFGKGKMKKDGSIGQPITVAPVELLQREERILWICYSVLDSINTLRLYESLKANLLSRNWYFDGVQKGSMYNFYEEYWRPFGSLLVNMEAQGLLIDRAYLSDVEKVAVSEQEIAATRFRDWASKYCPDAKYMNVGSDVQIRLLFFGGTLNRNNKTQMLPESKTFKVLDTEHVLRDGEKKSKYRNITLQSFGKQMQAEIYTASGWPSVSGDALKNFAGKILPGNTYLLNDRLKSNSNSEQTAFERSLYGTAYVAFGQGKEGKEACRAIAALCEVCSIDSLISNFILPLQGTRISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAEPGNTLVVADYGQLELRILAHLSNCQSMLEAFKAGGDFHSRTAMNMYTHVLKAVEDKTVLLEWHSQKGEEKPPVPLLKDAFAAERRKAKMLNFSIAYGKTPQGLSRDWKVSLKEAKETVSLWYKERREVLEWQEKRKEDLVTNHCVCTLLGRERKFPSLENVSQAQRGHIERAAINTPVQGSAADVVMCAMLEIERNTQLKELGWKLLLQIHDEVMLEGPTESAEIAKAIVVECMSKPFRGINILNVDLVVEAKIAQNWYAAK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02335	polA	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0006260	Biological Process	DNA replication
GO:0006139	Biological Process	nucleobase-containing compound metabolic process
GO:0006261	Biological Process	DNA-dependent DNA replication
GO:0003676	Molecular Function	nucleic acid binding
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity
GO:0003677	Molecular Function	DNA binding
GO:0008408	Molecular Function	3'-5' exonuclease activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.480
SRP064423	SRR2545915	Juvenile tuber	3.590
SRP108465	SRR5643513	five period of Gastrodia elata	2.010
	SRR5643514	five period of Gastrodia elata	1.470
	SRR5643515	five period of Gastrodia elata	1.240
	SRR5643524	five period of Gastrodia elata	1.470
	SRR5643525	five period of Gastrodia elata	1.040
	SRR5643528	five period of Gastrodia elata	0.540
	SRR5643658	five period of Gastrodia elata	0.710
	SRR5643659	five period of Gastrodia elata	3.310
	SRR5643660	five period of Gastrodia elata	3.830
	SRR5643661	five period of Gastrodia elata	3.360
	SRR5643662	five period of Gastrodia elata	3.020
	SRR5643663	five period of Gastrodia elata	3.050
	SRR5643664	five period of Gastrodia elata	2.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.820
SRP279888	Gastro	Gastrodia elata tuber	2.84
	Juven	Juvenile tuber	2.44
	Mother_Gastro	Mother tuber of Gastrodia elata	0.91
	Mother_Juven	Mother tuber of Juvenile	1.36