Gene detail

Detail information of GWHGAAEX003888/evm.TU.scaffold_140.25

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|338733967\|ref\|YP_004672440.1\|	1.00E-26	hypothetical protein SNE_A20720 [Simkania negevensis Z]
KOG	KOG2803	0	Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase
nr	gi\|672169258\|ref\|XP_008804653.1\|	0	PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Phoenix dactylifera]
Swissprot	tr\|Q9ZVI9\|PECT1_ARATH	0	Ethanolamine-phosphate cytidylyltransferase
trEMBL	tr\|J3NAX2\|J3NAX2_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB12G11300.1}
TAIR	AT2G38670	0	phosphorylethanolamine cytidylyltransferase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000138	1271372	1311369	-

Transcript Sequence
>GWHTAAEX003888 AGGAAATTTCTTTCTCTTTGATTTTATAAATATTAAACGCTCCCAGCGGTCAGCAACTCAAATTCGCCAATCGTACGTCCAGATTTTCCAAATTACAGGTTGTCTTTTGGAAGTGCTGATGCCCAGATCACCGTGTCTTAATCCCCGACCGTCTTTGGCCATGTATAGCAGTATCGATGGAGGGAGCTGAATTTATCGCACAACGAACACTACAGACGAGAAACCCTAGATCCGAAACCTTCACGATCTTCTCTGCTTACGGCGTTAATGGACGGTGGTGGAGGCAGATGCAGCGACGTTCTGGAGAAGCTCGCACTCTCTCGATACACCGCGGCAATGCTTCTTGGAGGGTTCGTACTCGGTGCATCGGTGTTGGCTGTGCACCTGGGCTATGAGCTGCCACTTCCGGCGTCAATAACCGGGTATAGGCTTCCCGGTCGGAGGAAGAAGAGGCCAATCCGGGTTTATATGGACGGGTGCTTCGACATGATGCACTATGGCCACTGCAACGCCCTACGGCAGGCGCAGGCTCTCGGAGACGAGCTTGTCGTCGGTGTTGTTAGCGATGCGGAGATCACGGAGAACAAGGGCCCGCCTGTGACTCCAATCAAGGAAAGGTTGATCATGGTTGGCGCTGTAAAATGGGTTGTTGAGGTCATCCCAGATGCTCCTTATGCCATCACTGAGGAATTTATGCACAAGCTCTTTAATGAGTATAACATAGATTATATAATCCACGGGGATGATCCTTGCTTGCTTCCAGATGGCTCTGATGCATATGCACTTGCCAAGAAGGCCGGCCGTTATAAACAGATCAAGAGAACTGAAGGAGTGTCGAGCACTGACATTGTTGGTCGCATGCTTCTTTGTGTGCGGGAGAGATCTGTTGGAGATCATCATGCACACTCTTCCTTGCAAAGGCAATTTAGCCACGGACACAACCAGAGATTTGATGATAAAAAATCTCCACACGGAGGAACTCGTGTATCTCATTTCCTACCTACCTCTCGGCGCATAGTTCAATTCTCAAATGGCAAGGGTCCATGTCCTGATGCTAGAGTAGTTTACATTGATGGTGCTTTTGATCTATTCCATGCCGGGCATGTAGAGATATTAAGGCTAGCTAAAGCACTTGGAGACTTCTTATTGGTTGGAATTCATACTGATCAGACTATCAGTTCTACACGTGGAGCCCATCGTCCAATCATGAATCTCCATGAGAGAAGTTTAAGCGTTTTGGCATGTCGGTATGTAGATGAGGTGATCATTGGCGCACCTTGGGATGTCTCAAAGGACATGATAACAACTTTCAATATCTCATTGGTTGTTCATGGAACAATTGCTGAAAACATGGATTATCTTATGGAGAAATCTAATCCTTATGCTGTTCCCATGGAACTGGGCATCCTGCAAACAATAAAAAGTCCTTTGGATATCACAACAAGCACCATCATTAAGAGGATTGTTTCAAATCATGAAGCCTATCAGAAACGAAATGACAGGAAGGAACAAAGTGAGAGGAAATATTATGAGAGCAAGGCTTACGTGTCTGAAGACTGACTGATGAACATCTTATTTAGCTAATTGTTGGTTATCTCAATCCAACCGGTATTGTCCTGTTGACACTTTATCCTACCACTCTTACTTCAGACGCTCCCTCTGAACACTCAACGCTTGAAATTTTTGCACTACTGAATGCTCAATTTTACTATACTGAGCAGATCTGTGTGACTTTTAATTTTTTTGATAAATATTGATAATAAGCTTTCGAATTTTGTTTTTTGTTTTCCCCATCATCCCGTTGTTATATCTAAATGTTGTTGTTGTTAGGATAACCCGTATTTTGCTAGTTGGGATAAAATAGTATCCCAAGGAAGATTTATAAGCCTGGTGCATGAATGTGGGCAGCTTGTGCTCAAAATTCGACCTATTTTCATGTTCTGGATTCAATCAATTCAATCTAATTTTATATTTTACAAATTTTCATTTATTGCTGTTATGCTAAATATTTTTTTGAATGATATTGTAGTTCTAGTAGTGTTGAG

Network for GWHGAAEX003888

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01467.25	CTP_transf_like	67	195	1.20E-23
PF01467.25	CTP_transf_like	267	359	3.00E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00967	PCYT2	Metabolic pathways	map01100
		Glycerophospholipid metabolism	map00564
		Phosphonate and phosphinate metabolism	map00440

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.720
SRP064423	SRR2545915	Juvenile tuber	47.820
SRP108465	SRR5643513	five period of Gastrodia elata	46.410
	SRR5643514	five period of Gastrodia elata	48.150
	SRR5643515	five period of Gastrodia elata	50.830
	SRR5643524	five period of Gastrodia elata	50.710
	SRR5643525	five period of Gastrodia elata	45.200
	SRR5643528	five period of Gastrodia elata	66.050
	SRR5643658	five period of Gastrodia elata	40.330
	SRR5643659	five period of Gastrodia elata	44.700
	SRR5643660	five period of Gastrodia elata	48.580
	SRR5643661	five period of Gastrodia elata	42.920
	SRR5643662	five period of Gastrodia elata	43.490
	SRR5643663	five period of Gastrodia elata	47.880
	SRR5643664	five period of Gastrodia elata	42.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	56.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	58.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	54.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	68.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	63.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	65.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	65.310
SRP279888	Gastro	Gastrodia elata tuber	80.98
	Juven	Juvenile tuber	72.84
	Mother_Gastro	Mother tuber of Gastrodia elata	88.90
	Mother_Juven	Mother tuber of Juvenile	113.95