Detail information of GWHGAAEX003891/evm.TU.scaffold_140.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0323 | 3.00E-150 | TFIIF-interacting CTD phosphatases, including NLI-interacting factor |
| nr | gi|695078401|ref|XP_009386584.1| | 0 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8LL04|CPL3_ARATH | 0 | RNA polymerase II C-terminal domain phosphatase-like 3 |
| trEMBL | tr|M0RHH9|M0RHH9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P12030_001} |
| TAIR | AT2G33540 | 3.00E-150 | C-terminal domain phosphatase-like 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000138 | 1542483 | 1550134 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003891
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03031.17 | NIF | 933 | 1089 | 1.70E-22 |
| PF00533.25 | BRCT | 1153 | 1229 | 4.30E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004721 | Molecular Function | phosphoprotein phosphatase activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.520 |
| SRR2545915 | Juvenile tuber | 9.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.480 |
| SRR5643514 | five period of Gastrodia elata | 6.330 | |
| SRR5643515 | five period of Gastrodia elata | 6.000 | |
| SRR5643524 | five period of Gastrodia elata | 6.320 | |
| SRR5643525 | five period of Gastrodia elata | 6.040 | |
| SRR5643528 | five period of Gastrodia elata | 6.910 | |
| SRR5643658 | five period of Gastrodia elata | 9.190 | |
| SRR5643659 | five period of Gastrodia elata | 4.730 | |
| SRR5643660 | five period of Gastrodia elata | 5.040 | |
| SRR5643661 | five period of Gastrodia elata | 4.290 | |
| SRR5643662 | five period of Gastrodia elata | 4.910 | |
| SRR5643663 | five period of Gastrodia elata | 4.210 | |
| SRR5643664 | five period of Gastrodia elata | 4.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.65 |
| Juven | Juvenile tuber | 4.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.97 | |
| Mother_Juven | Mother tuber of Juvenile | 6.55 |