Detail information of GWHGAAEX003895/evm.TU.scaffold_140.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08644.00E-84Ran-binding protein RANBP1 and related RanBD domain proteins
nrgi|695071592|ref|XP_009382877.1|3.22E-105PREDICTED: ran-binding protein 1 homolog a-like [Musa acuminata subsp. malaccensis]
Swissprottr|P92985|RBP1C_ARATH1.00E-88Ran-binding protein 1 homolog c
trEMBLtr|M0RQH2|M0RQH2_MUSAM1.00E-105Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P08420_001}
TAIRAT2G300604.00E-84Pleckstrin homology (PH) domain superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013819995922009342-
Transcript Sequence

Network for GWHGAAEX003895

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00638.17Ran_BP1401571.00E-40
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046907Biological Processintracellular transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms92.890
SRR2545915Juvenile tuber138.680
SRP108465SRR5643513five period of Gastrodia elata256.660
SRR5643514five period of Gastrodia elata285.900
SRR5643515five period of Gastrodia elata271.400
SRR5643524five period of Gastrodia elata283.150
SRR5643525five period of Gastrodia elata232.980
SRR5643528five period of Gastrodia elata283.630
SRR5643658five period of Gastrodia elata220.940
SRR5643659five period of Gastrodia elata301.960
SRR5643660five period of Gastrodia elata295.960
SRR5643661five period of Gastrodia elata317.500
SRR5643662five period of Gastrodia elata279.210
SRR5643663five period of Gastrodia elata264.240
SRR5643664five period of Gastrodia elata263.580
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1188.770
SRR6049655Rhizomagastrodiae_C368-T10_good_1159.910
SRR6049656Rhizomagastrodiae_C368-T07_good_1223.490
SRR6049657Rhizomagastrodiae_C368-T07_good_1152.530
SRR6049658Rhizomagastrodiae_C368-T04_good_1191.360
SRR6049659Rhizomagastrodiae_C368-T04_good_1165.360
SRR6049660Rhizomagastrodiae_C368-T01_good_1179.580
SRR6049661Rhizomagastrodiae_C368-T04_good_1190.210
SRR6049662Rhizomagastrodiae_C368-T01_good_1265.800
SRR6049663Rhizomagastrodiae_C368-T01_good_1240.040
SRR6049664Rhizomagastrodiae_C368-T10_good_1269.880
SRR6049665Rhizomagastrodiae_C368-T10_good_1269.880
SRP279888GastroGastrodia elata tuber 297.94
JuvenJuvenile tuber267.52
Mother_GastroMother tuber of Gastrodia elata 251.53
Mother_JuvenMother tuber of Juvenile 202.58