Detail information of GWHGAAEX003900/evm.TU.scaffold_140.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336117644|ref|YP_004572412.1| | 2.00E-31 | oxidoreductase [Microlunatus phosphovorus NM-1] |
| KOG | KOG0143 | 3.00E-147 | Iron/ascorbate family oxidoreductases |
| nr | gi|743788020|ref|XP_010922560.1| | 1.46E-168 | PREDICTED: protein SRG1-like [Elaeis guineensis] |
| Swissprot | tr|Q39224|SRG1_ARATH | 5.00E-75 | Protein SRG1 |
| trEMBL | tr|M0T2Q7|M0T2Q7_MUSAM | 1.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P29330_001} |
| TAIR | AT3G11180 | 3.00E-147 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000138 | 2452215 | 2455710 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003900
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 51 | 160 | 6.30E-28 |
| PF03171.19 | 2OG-FeII_Oxy | 211 | 308 | 1.10E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.770 |
| SRR2545915 | Juvenile tuber | 9.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 228.560 |
| SRR5643514 | five period of Gastrodia elata | 62.510 | |
| SRR5643515 | five period of Gastrodia elata | 313.670 | |
| SRR5643524 | five period of Gastrodia elata | 154.680 | |
| SRR5643525 | five period of Gastrodia elata | 61.830 | |
| SRR5643528 | five period of Gastrodia elata | 171.370 | |
| SRR5643658 | five period of Gastrodia elata | 61.190 | |
| SRR5643659 | five period of Gastrodia elata | 18.030 | |
| SRR5643660 | five period of Gastrodia elata | 10.880 | |
| SRR5643661 | five period of Gastrodia elata | 13.510 | |
| SRR5643662 | five period of Gastrodia elata | 37.380 | |
| SRR5643663 | five period of Gastrodia elata | 6.280 | |
| SRR5643664 | five period of Gastrodia elata | 2.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 57.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 56.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.97 |
| Juven | Juvenile tuber | 8.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 357.45 | |
| Mother_Juven | Mother tuber of Juvenile | 175.18 |