Detail information of GWHGAAEX003902/evm.TU.scaffold_140.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|34496482|ref|NP_900697.1| | 4.00E-95 | thymidylate synthase [Chromobacterium violaceum ATCC 12472] |
| KOG | KOG0673 | 4.00E-173 | Thymidylate synthase |
| nr | gi|514736708|ref|XP_004958499.1| | 0 | PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like [Setaria italica] |
| Swissprot | tr|O81395|DRTS_MAIZE | 0 | Thymidylate synthase |
| trEMBL | tr|K3ZSB7|K3ZSB7_SETIT | 0 | Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389} |
| TAIR | AT2G16370_2 | 4.00E-173 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000138 | 2692404 | 2707079 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003902
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00186.18 | DHFR_1 | 17 | 194 | 6.40E-35 |
| PF00303.18 | Thymidylat_synt | 225 | 510 | 9.80E-109 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13998 | DHFR-TS | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 | ||
| Folate biosynthesis | map00790 | ||
| One carbon pool by folate | map00670 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006730 | Biological Process | one-carbon metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0046654 | Biological Process | tetrahydrofolate biosynthetic process |
| GO:0006231 | Biological Process | dTMP biosynthetic process |
| GO:0004799 | Molecular Function | thymidylate synthase activity |
| GO:0004146 | Molecular Function | dihydrofolate reductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.030 |
| SRR2545915 | Juvenile tuber | 24.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.870 |
| SRR5643514 | five period of Gastrodia elata | 25.930 | |
| SRR5643515 | five period of Gastrodia elata | 27.230 | |
| SRR5643524 | five period of Gastrodia elata | 26.830 | |
| SRR5643525 | five period of Gastrodia elata | 25.070 | |
| SRR5643528 | five period of Gastrodia elata | 24.990 | |
| SRR5643658 | five period of Gastrodia elata | 25.520 | |
| SRR5643659 | five period of Gastrodia elata | 23.200 | |
| SRR5643660 | five period of Gastrodia elata | 23.010 | |
| SRR5643661 | five period of Gastrodia elata | 22.660 | |
| SRR5643662 | five period of Gastrodia elata | 23.460 | |
| SRR5643663 | five period of Gastrodia elata | 23.100 | |
| SRR5643664 | five period of Gastrodia elata | 22.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.87 |
| Juven | Juvenile tuber | 28.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.46 | |
| Mother_Juven | Mother tuber of Juvenile | 49.10 |