Detail information of GWHGAAEX003905/evm.TU.scaffold_141.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1865 | 3.00E-127 | Ubiquitin carboxyl-terminal hydrolase |
| nr | gi|672164765|ref|XP_008802270.1| | 1.08E-168 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FKP5|UBP17_ARATH | 8.00E-128 | Ubiquitin carboxyl-terminal hydrolase 17 |
| trEMBL | tr|A5B0M8|A5B0M8_VITVI | 2.00E-157 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN74012.1} |
| trEMBL | tr|A5B0M8|A5B0M8_VITVI | 1.00E-23 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN74012.1} |
| TAIR | AT5G65450 | 3.00E-127 | ubiquitin-specific protease 17 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000137 | 154212 | 168000 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003905
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01753.17 | zf-MYND | 84 | 121 | 1.40E-09 |
| PF00443.28 | UCH | 493 | 791 | 2.50E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 62.140 |
| SRR2545915 | Juvenile tuber | 31.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.930 |
| SRR5643514 | five period of Gastrodia elata | 12.840 | |
| SRR5643515 | five period of Gastrodia elata | 16.630 | |
| SRR5643524 | five period of Gastrodia elata | 15.210 | |
| SRR5643525 | five period of Gastrodia elata | 25.350 | |
| SRR5643528 | five period of Gastrodia elata | 22.270 | |
| SRR5643658 | five period of Gastrodia elata | 24.010 | |
| SRR5643659 | five period of Gastrodia elata | 17.170 | |
| SRR5643660 | five period of Gastrodia elata | 19.100 | |
| SRR5643661 | five period of Gastrodia elata | 18.610 | |
| SRR5643662 | five period of Gastrodia elata | 19.270 | |
| SRR5643663 | five period of Gastrodia elata | 21.550 | |
| SRR5643664 | five period of Gastrodia elata | 18.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 74.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 57.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 84.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 43.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.04 |
| Juven | Juvenile tuber | 80.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 49.65 | |
| Mother_Juven | Mother tuber of Juvenile | 103.63 |