Gene detail

Detail information of GWHGAAEX003909/evm.TU.scaffold_141.17

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|695013713\|ref\|XP_009393648.1\|	PREDICTED: root phototropism protein 3 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FMF5\|RPT3_ARATH	Root phototropism protein 3
trEMBL	tr\|A0A067DHF6\|A0A067DHF6_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO42273.1}
TAIR	AT5G64330	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000137	1137217	1173454	+

Transcript Sequence
>GWHTAAEX003909 ACATACTTTAAAGATCAAAGTATTCTCCAAAAGGAGCAAAATTTTCCATGAAATCTCAAGAGCTTGTAAGAATTATAGAACAGATTGAACAAAAACAGAGCCCCACAAACGTCCAAGCAACCCACGTGGTATTTTCTTCTTGATCACCACAACTGTACCCTGTCATCACGACCCGGATTTCTGAATCTTTTCCCCTTCCTCCTCATTCTCTGAAATCAGCCTCCTCTCTGTTCTTCCGAATTCCACGATCCGCCATTGACACCCTTTTCCCCACTTTGTGCTCTGCGCTCCTGATAGCTCGCAATGTGGGAGTCGGAGAGTGAATCCTGCAGCGGCATGAGAGATTCCGAAAGGCACGACGCGCTCAAGACCGACGCCTTCATTTGCAGAGATCAATCATGGCACGTCGCCAGCGAAATACCCAGCGATCTGCTGATCAATGTCGGCGATTCAGCATTCCATCTTCATAAATGTCCTCTGGTGTCGAGGAGCGGTAAGCTGAGCCGGATGATCTGCGAGAGTGAGCGGACCGCTGCAGTGGAGCTAAGCGAGATGCCGGGGGGGTGGGAGGCCTTCGAGCTAGCGGCGAAGTTTTGCTACGGGATCGCGGTGGATCTGACGGCGGGGAACATCGCTGGGTTGCGGTGCGCCGCGGAGTACCTGGAAATGACGGAGGATCTGGAGGAGGGGAATCTTATATTCAAGACAGAGGCGTTTCTGAGCTACGTGGTGCTGTCTTCGTGGAGGGACTCCATAGTGGTACTGAAGAGCTGCGAGGGACTGTCTCCGTGGGCAGAGAACCTGCAGATCGTCAGAAGATGCAGCGAGTCCATTGCGTGGAAGGCCTGCGCCAATCCGAGGGGCATAAGGTGGGCGTACGGCGGAAGGCTGTCACGCACCAATAGCCCCAAATGGACGGGCGGCGGCGGAGGAGATTACCGTGATTCACCGGTTCCGGCGGATTGGTGGTTCGAAGACGTCTCCATTCTTCGAATCGATCACTTCGTCCGCGTTGTCACCGCCATTAAGGTGAAAGGAATGCGCCACGAGCTGATTGGCGCGGCGATCATGCAGTACGCGGCGAAATGGCTCCCCGGTCTGGTTAAGGACAACGGGTCGGTGAGCGGAGCAGAGGATTACCTGTCGATTGCGACGACGGGCAGCGGGCTCCACATGATAGTGGCGGCGGGCCCCAAGGAATTGGACGGCGGCGGACCCCAAGGGTCCGCGGCCCGTGAGAAGCGCATGGTGATCGAGAGCGTGATCAGCATCCTGCCTTCCCAAAGGGACAGCGTCACGTGCGCCTTCCTCCTGCAGCTCCTCCGGCAGGCCAGCATGCTGAGGGTGGCCCCCGCCCTGGTCACTGAGCTGGAGAAGAGGGTCGGAATGCAGCTGGAGCAGGCCAGCCTCTCTGATCTGATGATCCCTTCCTACTACGCCAAGGCCGATCAGACCACCTTCGACGTCGATTTGGTCCAGAGATTGGTCGAGCATTTCTTGGTGCAGGAACAGGCGGCCGAAGGGGACAGCCCTCCCCAGCCCAAGCAAGGCGCCAATGCAAAGATGAGGGTCGCCCGCCTTCTCGATAGCTATTTGACTGAGGTCTCCAGGGATCGGAATCTGTCACTCACCAAATTCCAGGCTTTGGCCGAGGCCTTGCCCGACTCTGCCAGGTCCTGCGACGATGGTCTTTACAGAGCCGTTGATTCTTATCTCAAGGCACATCCGACGTTAACGGAACACGAGAGGAAGCGCTTATGCCGCGTGATGGATTGCCAAAAGTTGTCCATTGATGCCTGTATGCACGCAGCGCAGAACGAGAGGCTTCCTCTCCGAATCGTGGTTCAAGTGCTGTTTTCTGAGCAAGTTAAAATCAGCAACGCAATAGCCAATTCCGCGCTCAAGGAAGCCACCGTTTCCGCCGCCGCCGCCGCCGAAGGGAATCAGTACCAGCCGATGATTTCAACGCGGAAGCAACTGATCGAAGGAACTCCGCAGTCGTTTCAGGAAGGCTGGGCGGCCGCTAAAAAGGACATAAACACGCTGAAGTTCGAGCTCGAAGGCGTGAAGGGAAAGTATGCGGAGCTGCAGAATGAGGTGGATGGGCTGCAGAGGCAGGTTGAGAAGATGACGGTGGTGGTGCCAGGGGCGGTGAAGACTCCAGGGAAGACGAGTGGGTGGTGGAGATTGGGAAAACTGTCGAAGACGGGAGGGGCGGAGGGCCACGATGCGAGGACGCCCGCCGCCGGGGAAGCGCCCGCCTCCAGGAAGGGGGCCAGGAGGTGGAGGAATTCTATTTCTTGATATGGGTAAGGAGGGCTGCTGAGTCTTTTCAAATTAATGGGATTGATTGTACGCCTTGCTTTGAATTTAGTTTTGGGTACATATTTTGTTTTCTTTTGGACCGTTAGTATTTTGAATTATAGTTGATTGGCCCAATGTGGGTGTGAATGTGTTCATGCTGATCATCCCCGGCTTGCGAGTGTTCTCAATGCCACATTCGTGCCCAAGTTTTTATTTAGGCAAATGTTGTTGAATTTGCTGAGGAAAGCTCATGTTCTGGCCCATTATACATGAATATGCTGAGAAATATAATTGAGCAGATTGTCT

Network for GWHGAAEX003909

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03000.13	NPH3	220	499	3.30E-105

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.090
SRP064423	SRR2545915	Juvenile tuber	0.320
SRP108465	SRR5643513	five period of Gastrodia elata	2.050
	SRR5643514	five period of Gastrodia elata	3.320
	SRR5643515	five period of Gastrodia elata	2.300
	SRR5643524	five period of Gastrodia elata	2.150
	SRR5643525	five period of Gastrodia elata	3.600
	SRR5643528	five period of Gastrodia elata	6.120
	SRR5643658	five period of Gastrodia elata	5.700
	SRR5643659	five period of Gastrodia elata	1.470
	SRR5643660	five period of Gastrodia elata	1.040
	SRR5643661	five period of Gastrodia elata	2.660
	SRR5643662	five period of Gastrodia elata	1.690
	SRR5643663	five period of Gastrodia elata	4.820
	SRR5643664	five period of Gastrodia elata	2.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.850
SRP279888	Gastro	Gastrodia elata tuber	0.62
	Juven	Juvenile tuber	0.29
	Mother_Gastro	Mother tuber of Gastrodia elata	0.17
	Mother_Juven	Mother tuber of Juvenile	0.20