Gene detail

Detail information of GWHGAAEX003910/evm.TU.scaffold_141.19

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0656	3.00E-81	G1/S-specific cyclin D
nr	gi\|695044724\|ref\|XP_009410124.1\|	1.16E-150	PREDICTED: cyclin-D3-1-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q69QB8\|CCD31_ORYSJ	2.00E-101	Cyclin-D3-1
trEMBL	tr\|G0YWA2\|G0YWA2_MUSAC	5.00E-151	Cyclin dependent kinase regulator {ECO:0000313\|EMBL:AEK20778.1}
TAIR	AT2G22490	3.00E-81	Cyclin D2;1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000137	1300897	1303753	-

Transcript Sequence
>GWHTAAEX003910 GCCCAGGAATAACATAACTTGTCTTAAAAATAACCATCCATCTATTGTCACATATTGAAAGGGCTCTCGAATTTTTTTGAAAGAGATGGGTTTAAGCTATCAGTGCGCCTCCTCCGTCCTCCTTTGTTCTGAAGACAACAGCAGCATCTTCGGCTTTGATGAAGAAGAAGTAGAGTTTCAAAGGCATTGGCCTGATTGCAGTTCTCAACCAAAAAGCTGCGATCTTTATAAAGATTTCTTGATGAGTTTTCCCTTGCTATCTGATGAGTGCGAGCGCCTTCTTCTGCACAGAGAGCTTGAGCATCTGCCTAGGGAAGACTATGCAAAAAGGTTGATGAATGGATCTTTGAATGTTTCTCTCAGAAGTGATGCCATAGATTGGATACTAAAGGTTCATGCCTACTACAATTTTGGACCTTTATGTGCTTATCTTGCTGTTAATTATCTGGATCGATTTCTCTCTTACTATGAGCTTCCTCAAGGAAAGGCATGGATGACTCAGTTGTTGTCAGTAGCATGCTTATCTTTGGCTGCCAAAGTGGAAGAGACTCAAGTCCCTCTACTGCTTGATCTACAGGTGAGTGAAGCCAAGTTTGTCTTTGAGGCTAGGACTATCCAGAGAATGGAACTCTTGTTATTGAGCACCCTCAAATGGAGGATGCATGCCGTCACACCCTTCTCATTCATTGATCGCTTCCTTCACGAGTTCAGCGGTGGCAAATCCCCATCCAGCCTATCATATTCTCAATCGGTTGAGCTCATTCTCAACACCATGAGAGGGGTTGATTTCTTAGCATTCAAACCTTCTGAAATTGCTGCTGCCACCAGTGTGATAGTGACGAGTGAGGCTCAAGCTGTGGATGTCAAGAAGGCGATTGCTTGTTGCTGCAATGTAGATAAGGAGAGAGTGTTAAGATGCTATGATGTGATGCGGGAGGATTTACTCGTAAACACTACAAAATGCAATAATGGGACGGCATCAGTTCCTTCGATTCCTCTTAGCCCAGTTGGGGTTCTGGAAGCTGCATGTTTGAGCTATGCCAGTGATGAAAAGACATCTGAGCCTCAGCCAAGCGCTAACCTCTCTTGTTCTCCAACTGCAAAGAGAAGGAAAGTATGCAGGGTTATCTTGTCATGATGGAGAGTAGGGATCTATCTCTTTTCAGGTTTTGTACTCTAATCTTATTATAAGAGTGTCATACTGAGTTTAATGTGAGAAACGTCGGAATTCTTTGATGTATGAAAAATTTGCAATTGAAGATGGATAAAGCTTGGAAAGATGAAGCGTATGGAGATTAGAAATAAATGGAGGTAATTGGATTAGTTAATTAATCTTCTGAATATAAGTAGGGCTGCCACCAGCTGTTATAACAATGATAATGTGGAGATGCTGCGTGTGATGAGAAGGTAATAGTGTGAAAAGTGTTAGTTTTTTTTGGGTTATTATTTTTTTCTTTTGAGAGAAATTTGGAAAACAATTTTCGGTGGAGAGGAAAACTTTGACACTAGAACACTAATAAAAATAATCTGAAGTTTGTATATTTTTTGTAGCAACA

Network for GWHGAAEX003910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.22	Cyclin_N	66	192	6.70E-32
PF02984.18	Cyclin_C	195	287	1.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	69.760
SRP064423	SRR2545915	Juvenile tuber	168.590
SRP108465	SRR5643513	five period of Gastrodia elata	53.130
	SRR5643514	five period of Gastrodia elata	48.160
	SRR5643515	five period of Gastrodia elata	41.900
	SRR5643524	five period of Gastrodia elata	52.510
	SRR5643525	five period of Gastrodia elata	20.040
	SRR5643528	five period of Gastrodia elata	13.140
	SRR5643658	five period of Gastrodia elata	20.430
	SRR5643659	five period of Gastrodia elata	75.630
	SRR5643660	five period of Gastrodia elata	76.160
	SRR5643661	five period of Gastrodia elata	67.620
	SRR5643662	five period of Gastrodia elata	49.290
	SRR5643663	five period of Gastrodia elata	65.000
	SRR5643664	five period of Gastrodia elata	53.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	62.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	80.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	63.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	65.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	59.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	71.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	76.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	65.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	66.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	62.040
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	62.040
SRP279888	Gastro	Gastrodia elata tuber	66.48
	Juven	Juvenile tuber	55.78
	Mother_Gastro	Mother tuber of Gastrodia elata	14.74
	Mother_Juven	Mother tuber of Juvenile	30.33