Detail information of GWHGAAEX003918/evm.TU.scaffold_141.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|302348721|ref|YP_003816359.1|2.00E-11replicative DNA helicase Mcm [Acidilobus saccharovorans 345-15]
KOGKOG04803.00E-22DNA replication licensing factor, MCM6 component
nrgi|728828977|gb|KHG08420.1|5.61E-26DNA replication licensing factor MCM8 [Gossypium arboreum]
Swissprottr|Q9SF37|MCM8_ARATH8.00E-23Probable DNA helicase MCM8
trEMBLtr|B4F8M3|B4F8M3_MAIZE2.00E-24Uncharacterized protein {ECO:0000313|EMBL:ACF78466.1}
TAIRAT3G096603.00E-22minichromosome maintenance 8

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013726933072698544-
Transcript Sequence

Network for GWHGAAEX003918

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00493.22MCM2212741.70E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006270Biological ProcessDNA replication initiation
GO:0005524Molecular FunctionATP binding
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.970
SRR2545915Juvenile tuber4.580
SRP108465SRR5643513five period of Gastrodia elata4.250
SRR5643514five period of Gastrodia elata2.770
SRR5643515five period of Gastrodia elata3.750
SRR5643524five period of Gastrodia elata4.880
SRR5643525five period of Gastrodia elata0.900
SRR5643528five period of Gastrodia elata1.020
SRR5643658five period of Gastrodia elata1.360
SRR5643659five period of Gastrodia elata6.640
SRR5643660five period of Gastrodia elata6.270
SRR5643661five period of Gastrodia elata1.520
SRR5643662five period of Gastrodia elata4.200
SRR5643663five period of Gastrodia elata7.150
SRR5643664five period of Gastrodia elata6.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.800
SRR6049655Rhizomagastrodiae_C368-T10_good_13.500
SRR6049656Rhizomagastrodiae_C368-T07_good_14.560
SRR6049657Rhizomagastrodiae_C368-T07_good_15.690
SRR6049658Rhizomagastrodiae_C368-T04_good_110.170
SRR6049659Rhizomagastrodiae_C368-T04_good_18.180
SRR6049660Rhizomagastrodiae_C368-T01_good_15.300
SRR6049661Rhizomagastrodiae_C368-T04_good_18.090
SRR6049662Rhizomagastrodiae_C368-T01_good_14.020
SRR6049663Rhizomagastrodiae_C368-T01_good_16.520
SRR6049664Rhizomagastrodiae_C368-T10_good_13.940
SRR6049665Rhizomagastrodiae_C368-T10_good_13.940
SRP279888GastroGastrodia elata tuber 5.43
JuvenJuvenile tuber1.46
Mother_GastroMother tuber of Gastrodia elata 2.70
Mother_JuvenMother tuber of Juvenile 0.71