Detail information of GWHGAAEX003932/evm.TU.scaffold_142.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 9.00E-40 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695036969|ref|XP_009405958.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At1g74360 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|C0LGJ1|Y1743_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At1g74360 (Precursor) |
| trEMBL | tr|K3ZQ78|K3ZQ78_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si028758m} |
| TAIR | AT1G74360 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000140 | 894444 | 897998 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003932
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 28 | 70 | 3.90E-08 |
| PF00560.32 | LRR_1 | 411 | 432 | 0.98 |
| PF00069.24 | Pkinase | 790 | 988 | 9.20E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-Xb-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.620 |
| SRR2545915 | Juvenile tuber | 19.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.920 |
| SRR5643514 | five period of Gastrodia elata | 5.230 | |
| SRR5643515 | five period of Gastrodia elata | 25.910 | |
| SRR5643524 | five period of Gastrodia elata | 7.730 | |
| SRR5643525 | five period of Gastrodia elata | 12.970 | |
| SRR5643528 | five period of Gastrodia elata | 76.110 | |
| SRR5643658 | five period of Gastrodia elata | 19.020 | |
| SRR5643659 | five period of Gastrodia elata | 37.180 | |
| SRR5643660 | five period of Gastrodia elata | 17.160 | |
| SRR5643661 | five period of Gastrodia elata | 25.140 | |
| SRR5643662 | five period of Gastrodia elata | 24.290 | |
| SRR5643663 | five period of Gastrodia elata | 19.500 | |
| SRR5643664 | five period of Gastrodia elata | 22.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.80 |
| Juven | Juvenile tuber | 4.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 93.31 | |
| Mother_Juven | Mother tuber of Juvenile | 261.44 |