Detail information of GWHGAAEX003936/evm.TU.scaffold_142.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|156937517|ref|YP_001435313.1|1.00E-0750S ribosomal protein L24 [Ignicoccus hospitalis KIN4/I]
KOGKOG17224.00E-7360s ribosomal protein L24
nrgi|224122388|ref|XP_002318822.1|1.49E-87hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
Swissprottr|Q9FUL4|RL24_PRUAV9.00E-8160S ribosomal protein L24
trEMBLtr|A0A067KAG6|A0A067KAG6_JATCU2.00E-88Uncharacterized protein {ECO:0000313|EMBL:KDP29235.1}
TAIRAT2G366204.00E-73ribosomal protein L24

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000140972519982757+
Transcript Sequence

Network for GWHGAAEX003936

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01246.19Ribosomal_L24e3675.00E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02896RP-L24e, RPL24 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms85.450
SRR2545915Juvenile tuber92.670
SRP108465SRR5643513five period of Gastrodia elata112.750
SRR5643514five period of Gastrodia elata111.530
SRR5643515five period of Gastrodia elata101.690
SRR5643524five period of Gastrodia elata112.340
SRR5643525five period of Gastrodia elata82.180
SRR5643528five period of Gastrodia elata94.830
SRR5643658five period of Gastrodia elata98.200
SRR5643659five period of Gastrodia elata107.130
SRR5643660five period of Gastrodia elata99.680
SRR5643661five period of Gastrodia elata106.760
SRR5643662five period of Gastrodia elata108.030
SRR5643663five period of Gastrodia elata98.180
SRR5643664five period of Gastrodia elata108.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1107.750
SRR6049655Rhizomagastrodiae_C368-T10_good_1159.800
SRR6049656Rhizomagastrodiae_C368-T07_good_1123.190
SRR6049657Rhizomagastrodiae_C368-T07_good_1103.230
SRR6049658Rhizomagastrodiae_C368-T04_good_198.250
SRR6049659Rhizomagastrodiae_C368-T04_good_1100.470
SRR6049660Rhizomagastrodiae_C368-T01_good_1108.990
SRR6049661Rhizomagastrodiae_C368-T04_good_1105.910
SRR6049662Rhizomagastrodiae_C368-T01_good_1128.280
SRR6049663Rhizomagastrodiae_C368-T01_good_1119.910
SRR6049664Rhizomagastrodiae_C368-T10_good_1137.640
SRR6049665Rhizomagastrodiae_C368-T10_good_1137.640
SRP279888GastroGastrodia elata tuber 134.32
JuvenJuvenile tuber108.67
Mother_GastroMother tuber of Gastrodia elata 95.66
Mother_JuvenMother tuber of Juvenile 84.94