Detail information of GWHGAAEX003938/evm.TU.scaffold_142.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|166364034|ref|YP_001656307.1| | 4.00E-17 | phytoene dehydrogenase [Microcystis aeruginosa NIES-843] |
| KOG | KOG0029 | 1.00E-26 | Amine oxidase |
| nr | gi|643722869|gb|KDP32566.1| | 4.27E-28 | hypothetical protein JCGZ_13116 [Jatropha curcas] |
| Swissprot | tr|Q40406|CRTI_NARPS | 2.00E-29 | Phytoene dehydrogenase, chloroplastic/chromoplastic (Precursor) |
| trEMBL | tr|A0A067K8K2|A0A067K8K2_JATCU | 2.00E-28 | Uncharacterized protein {ECO:0000313|EMBL:KDP32566.1} |
| TAIR | AT4G14210 | 1.00E-26 | phytoene desaturase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000140 | 1163755 | 1174773 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003938
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01593.23 | Amino_oxidase | 135 | 188 | 0.00012 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02293 | PDS, crtP | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Carotenoid biosynthesis | map00906 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.460 |
| SRR2545915 | Juvenile tuber | 6.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.810 |
| SRR5643514 | five period of Gastrodia elata | 2.900 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 1.150 | |
| SRR5643525 | five period of Gastrodia elata | 1.500 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.620 | |
| SRR5643659 | five period of Gastrodia elata | 0.490 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.180 | |
| SRR5643662 | five period of Gastrodia elata | 0.180 | |
| SRR5643663 | five period of Gastrodia elata | 0.140 | |
| SRR5643664 | five period of Gastrodia elata | 0.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.15 |
| Juven | Juvenile tuber | 2.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.77 | |
| Mother_Juven | Mother tuber of Juvenile | 0.71 |