Detail information of GWHGAAEX003940/evm.TU.scaffold_142.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428224591|ref|YP_007108688.1| | 0 | zeta-carotene desaturase, three-step phytoene desaturase [Geitlerinema sp. PCC 7407] |
| KOG | KOG0029 | 0 | Amine oxidase |
| nr | gi|614107896|sp|C3VEP9.1|PDS_ONCHC | 0 | RecName: Full=15-cis-phytoene desaturase, chloroplastic/chromoplastic; AltName: Full=Phytoene dehydrogenase; Short=OgPDS; Flags: Precursor [Oncidium hybrid cultivar] |
| Swissprot | tr|C3VEP9|PDS_ONCHC | 0 | 15-cis-phytoene desaturase, chloroplastic/chromoplastic (Precursor) |
| trEMBL | tr|S4TL46|S4TL46_9LILI | 0 | Phytoene desaturase {ECO:0000313|EMBL:AGC74040.1} |
| TAIR | AT4G14210 | 0 | phytoene desaturase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000140 | 1267891 | 1284982 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003940
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01593.23 | Amino_oxidase | 118 | 560 | 2.50E-78 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02293 | PDS, crtP | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Carotenoid biosynthesis | map00906 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016117 | Biological Process | carotenoid biosynthetic process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0016166 | Molecular Function | phytoene dehydrogenase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.080 |
| SRR2545915 | Juvenile tuber | 37.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.300 |
| SRR5643514 | five period of Gastrodia elata | 36.080 | |
| SRR5643515 | five period of Gastrodia elata | 32.600 | |
| SRR5643524 | five period of Gastrodia elata | 33.590 | |
| SRR5643525 | five period of Gastrodia elata | 18.690 | |
| SRR5643528 | five period of Gastrodia elata | 18.350 | |
| SRR5643658 | five period of Gastrodia elata | 21.160 | |
| SRR5643659 | five period of Gastrodia elata | 19.280 | |
| SRR5643660 | five period of Gastrodia elata | 14.890 | |
| SRR5643661 | five period of Gastrodia elata | 16.080 | |
| SRR5643662 | five period of Gastrodia elata | 19.020 | |
| SRR5643663 | five period of Gastrodia elata | 19.210 | |
| SRR5643664 | five period of Gastrodia elata | 17.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 39.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 50.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 53.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 58.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.80 |
| Juven | Juvenile tuber | 30.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.56 | |
| Mother_Juven | Mother tuber of Juvenile | 16.60 |