Detail information of GWHGAAEX003941/evm.TU.scaffold_142.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672170063|ref|XP_008805082.1|2.72E-126PREDICTED: uncharacterized protein LOC103718167 [Phoenix dactylifera]
trEMBLtr|F6GT36|F6GT36_VITVI1.00E-119Putative uncharacterized protein {ECO:0000313|EMBL:CCB43060.1}
TAIRAT3G292702.00E-103RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014013646891389140+
Transcript Sequence

Network for GWHGAAEX003941

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13445.5zf-RING_UBOX41938.70E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.350
SRR2545915Juvenile tuber28.340
SRP108465SRR5643513five period of Gastrodia elata23.370
SRR5643514five period of Gastrodia elata25.010
SRR5643515five period of Gastrodia elata22.380
SRR5643524five period of Gastrodia elata22.600
SRR5643525five period of Gastrodia elata25.130
SRR5643528five period of Gastrodia elata21.850
SRR5643658five period of Gastrodia elata32.520
SRR5643659five period of Gastrodia elata20.830
SRR5643660five period of Gastrodia elata19.150
SRR5643661five period of Gastrodia elata20.370
SRR5643662five period of Gastrodia elata23.050
SRR5643663five period of Gastrodia elata21.440
SRR5643664five period of Gastrodia elata22.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.300
SRR6049655Rhizomagastrodiae_C368-T10_good_130.750
SRR6049656Rhizomagastrodiae_C368-T07_good_130.120
SRR6049657Rhizomagastrodiae_C368-T07_good_137.140
SRR6049658Rhizomagastrodiae_C368-T04_good_143.390
SRR6049659Rhizomagastrodiae_C368-T04_good_154.620
SRR6049660Rhizomagastrodiae_C368-T01_good_132.750
SRR6049661Rhizomagastrodiae_C368-T04_good_138.990
SRR6049662Rhizomagastrodiae_C368-T01_good_126.140
SRR6049663Rhizomagastrodiae_C368-T01_good_134.990
SRR6049664Rhizomagastrodiae_C368-T10_good_127.600
SRR6049665Rhizomagastrodiae_C368-T10_good_127.600
SRP279888GastroGastrodia elata tuber 31.11
JuvenJuvenile tuber37.01
Mother_GastroMother tuber of Gastrodia elata 31.29
Mother_JuvenMother tuber of Juvenile 29.76