Gene detail

Detail information of GWHGAAEX003942/evm.TU.scaffold_142.37

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743837326\|ref\|XP_010936363.1\|	1.26E-23	PREDICTED: uncharacterized protein LOC105056001 [Elaeis guineensis]
trEMBL	tr\|F6H5M1\|F6H5M1_VITVI	2.00E-21	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47589.1}
TAIR	AT5G39380	2.00E-14	Plant calmodulin-binding protein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000140	1531860	1535426	+

Transcript Sequence
>GWHTAAEX003942 GTCGATGAGAAATCTGGTCCGGTGGACCGTTACGAAGCCTTCCCCCTCCGTTCTCGCGCCATATTAAATCCCTCCCTCCGATTTTCCCTCTATTTCGTTTCTCCCCTCTCGATCCATCCAACTCTAAGCCATTCCCAAAAATCAAAGGTAAAGATAAAAATAAACAATAAGGCTTCTTTGTTGCGTCCACGATCTGGCGAAGAGATGCGTCCCCGTTCCCTCTTTGGGGTCTCTTCCAATGGGCACCTATTTCTTCGCTTCCGCGTTACGGAAATCGTCCGAAAGGCGTCTTTTTGACGGTTCTTTTTCCTTTTATTCTGCGTCTCTGTTACGGCTTTTGTTGAAGGTGGGTTTGTGCTCTTGATTTATCCATCGATCGAATCGATCGATCGATCGTCTTTAGGGATTGATTTGTGCCTTTGTTTGCTGTGCATTTGCTTTTTAATATTTGCTGAAGAACTACTTCTGGAAGAGGATGGTCTGTTGTTTAGTCTTTTTTCATGCGAAGGACTCAAAGTTTGCATCTTACAAAGAACAGTCTCTTTTCTGCTTTCCATTTTTACAACGATTTGATTGTGACGTTGACATTTGCTTATATCTAAAATTTCCACCTTTATTAATAAGGGGGCTCTGAACCTTTTGTTTCTCTGATGGACAAAGCCTATGTGAAACTCGATGCCGTCTCTTTGAGCCTAGTGAATGATTTGCCAAATGATAGGGCGGAGATAAAGAGCCGCGGTCCTTTGTTCATGTTGAATAGCTATGCCAATGTTGGCTCTCGGTATCGTAAGGAACATTCGCGTTCCTCTTGTCATGAGTTCTGCAAGTATGGGATGAAGCACGAATCTAAGCAAGATGAAAAAAGCCTCAATTTTAGAAGGCATAGCATTGATTTAGAATCTGTATGGAATCCGGCGAATGGTTCGGCCTCCCTCGGCAGCAGAAGGAAGGAATCCACAGCTAAGACAAAGCCTGCTGGTTTATCCAATGCTGCTGAGCAAAATGTCCAACCTAAGAGAGTTGGGATATCTGGTCACTCTTTTGATTATAAGTTTTCAAATTCCTTATCCAAATACAAATTCAGTTCATGCCCTATTGTCCCAGTAGACTCCGAGCAGCATAATGACTCATTAGCAGTGACAATTGAGTCTTCTAATGATTCCATTAGCATTGTGTTGGAGGCTCACTCGCCGACTCATCTATTCACGAAATCTCTTGATTCGGAGAGTATTTGTGGGACTTTGGAGCAGAAAAAGATTGATGGATCTGAGAGCAATGCTAAAGTTGATACTGAGGCTCTCTTATCTGAAAGTAAAAGCGCTGAAATCTCTCCGCCAGTGGTTGTTTCAGAAGTTGCAGATGAAGAGAGAAATCAAGTCAAAATTTCGAGTAGTAATGAGAGCAAGAAACAGTTGAATAAACACAAGGCTCCATCAATAATGCCTAAATCCATTCCTTTAAAGAGCAAGACGCTCAAACCGAAAAACTCATCAGCTTCCACTGGAGCCGATCCTGTAGGCAGAACAAATACCCCTGTAGGAAAGGTTCTACCAAGTTCTGAGGATTTAACCACAGCTGCAACAGTCACAGTCACCAAAAAGAACAATAATGTCCTCAAAAAACAAGCTTCATCTTCTAATATACAAGGGACTAATCAAAATACTCCACCCCTACTCAGAAAAACGTTGTCTATGAGTGTTAGGCCTCCATTGATGAGGCCTGCAGCTCCTTTGCTTGCTTCTCGAAGTTCAAATGGTAGGATGAATTTGGAGGAAAAAACACTAAAGAGAAACGAAATGCGGGAAGTTGAGGCAACAACGGTATCGAAGCCTAAAAAGGCCATCATTTCTTATTCAAAACTGACTGGCGACACCGTGAGCTCTAAGGCACTGAAATCTGGGCACACCAACCGTGCAATTCTGAAAACATCTCGAAAGACAAAAATTGATGGTGCTGATTGCCACGAGAAGATACTGAAAGTTATCGAACCAAATATAGCTAGCAAAGGATTGAAATCTCAAGGGAAAGAGCTTGATGGAAGAAGCAATTCAAAAGAAGAAAGTAAGAAATGGGTAAGAAGAACTACAACTGCTCAGAAAGCCGCAGACTGCTCTTCCTCGGCATACAAGCTGAAATTCAAGAAAGGCAAAGTCGTAGAGCTCCCAATAACTGACAATGCTACTCCTAGAAGGCTTAGATTCAGGAGAGGGAGAGTGCTTGGTGAGAACCCCACTGGTGAAGCCTTGAAGACAAGCTTGAGAAGGAAGAAAGACACAGCAGACTCCAATGAATGTAATTCAGATGCTCCTGTTTTGTTAAAGAAGGCCAATCTGAAATCTAGAGGCAGCACTTTGAGCTGTCAAGATGAGCTGGGAAAGAAGGGCGAGCCGGCTCTTTTGAATGAAGTGATCGAGGAGACAGTAAGCAAGCTTGGCGGGACTACTGTGAAGGCCCTGGTGGGCGCTTTCGAGACAGTTATCTCGCTCCAGGAGGCAAAACCTGTACCTGTTGCTTGAGGTGTGAGTTTAGTCTTTTCTTTTGTAATTGTGTTTAGTTGCTTGGCAGCACTTCTACTCATTGCTTATTCTATACTGCAAAAATTGCTCTTACTTGTATCCAACAAGACTGAAAATGTATACATTAAGCACACAGTATCCTGAGGCTTGTTCATATTGTTTTTTATTATTTTTCTCTGTGATTACCCGTGGAAAGGTTGTTTGGGTTTAGCTCTGATAATTGTTGAGAAATCACAAAAATTGGTTGAACTTCATTTGTCATTGTTTTGTATTAGTATCTTTGTTTTTGATACATTGTTACTTACTTATTT

Network for GWHGAAEX003942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07839.10	CaM_binding	493	611	1.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005516	Molecular Function	calmodulin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.430
SRP064423	SRR2545915	Juvenile tuber	8.260
SRP108465	SRR5643513	five period of Gastrodia elata	10.910
	SRR5643514	five period of Gastrodia elata	20.280
	SRR5643515	five period of Gastrodia elata	13.860
	SRR5643524	five period of Gastrodia elata	17.170
	SRR5643525	five period of Gastrodia elata	58.600
	SRR5643528	five period of Gastrodia elata	73.580
	SRR5643658	five period of Gastrodia elata	90.370
	SRR5643659	five period of Gastrodia elata	0.930
	SRR5643660	five period of Gastrodia elata	0.410
	SRR5643661	five period of Gastrodia elata	0.510
	SRR5643662	five period of Gastrodia elata	1.240
	SRR5643663	five period of Gastrodia elata	0.680
	SRR5643664	five period of Gastrodia elata	1.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.710
SRP279888	Gastro	Gastrodia elata tuber	1.79
	Juven	Juvenile tuber	0.86
	Mother_Gastro	Mother tuber of Gastrodia elata	22.21
	Mother_Juven	Mother tuber of Juvenile	13.86