Detail information of GWHGAAEX003944/evm.TU.scaffold_142.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-164 | FOG: PPR repeat |
| nr | gi|743837299|ref|XP_010936356.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Elaeis guineensis] |
| Swissprot | tr|Q84J46|PP262_ARATH | 2.00E-163 | Pentatricopeptide repeat-containing protein At3g29290 |
| trEMBL | tr|M0SNU5|M0SNU5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P14300_001} |
| TAIR | AT3G29290 | 6.00E-164 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000140 | 1739797 | 1751641 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003944
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 183 | 228 | 1.60E-07 |
| PF13041.5 | PPR_2 | 254 | 301 | 6.00E-09 |
| PF01535.19 | PPR | 330 | 356 | 0.038 |
| PF13041.5 | PPR_2 | 358 | 405 | 9.10E-10 |
| PF01535.19 | PPR | 434 | 461 | 0.15 |
| PF13041.5 | PPR_2 | 465 | 511 | 1.70E-09 |
| PF01535.19 | PPR | 533 | 562 | 0.0054 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.920 |
| SRR2545915 | Juvenile tuber | 1.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.730 |
| SRR5643514 | five period of Gastrodia elata | 2.040 | |
| SRR5643515 | five period of Gastrodia elata | 1.180 | |
| SRR5643524 | five period of Gastrodia elata | 1.750 | |
| SRR5643525 | five period of Gastrodia elata | 0.750 | |
| SRR5643528 | five period of Gastrodia elata | 0.160 | |
| SRR5643658 | five period of Gastrodia elata | 0.580 | |
| SRR5643659 | five period of Gastrodia elata | 2.110 | |
| SRR5643660 | five period of Gastrodia elata | 2.030 | |
| SRR5643661 | five period of Gastrodia elata | 2.220 | |
| SRR5643662 | five period of Gastrodia elata | 2.680 | |
| SRR5643663 | five period of Gastrodia elata | 2.240 | |
| SRR5643664 | five period of Gastrodia elata | 2.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.53 |
| Juven | Juvenile tuber | 1.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.46 | |
| Mother_Juven | Mother tuber of Juvenile | 0.42 |