Gene detail

Detail information of GWHGAAEX003946/evm.TU.scaffold_142.43

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|428310426\|ref\|YP_007121403.1\|	ATP-dependent chaperone ClpB [Microcoleus sp. PCC 7113]
KOG	KOG1051	Chaperone HSP104 and related ATP-dependent Clp proteases
nr	gi\|743837277\|ref\|XP_010936352.1\|	PREDICTED: chaperone protein ClpB3, chloroplastic isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9LF37\|CLPB3_ARATH	Chaperone protein ClpB3, chloroplastic (Precursor)
trEMBL	tr\|G7L491\|G7L491_MEDTR	Casein lytic proteinase B3 {ECO:0000313\|EMBL:AES77608.2}
TAIR	AT5G15450	casein lytic proteinase B3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000140	1870349	1891426	-

Transcript Sequence
>GWHTAAEX003946 TTGACACCTGTAAGAGTCCAATGCGGCACTCCGCAGCTCTACCAGTCTCCACAAGCTTCTCGTAGCTTCCTTCATCACTCTCTATTATCCTTCCTCCTCTCATGATAAAGCCATCGCCGGAAAGAGGAACGAATCGCTGTTCTTTCATCAACCAATGGCGACATCTGCATTCCATGCCCCCCACCCCCGCCTGCCCCCGCCTTCGCTGAGGACTATTCGTTCAAGAATCACCTTCTCGTCTGCTCTCCCAATTCCCACCAACTCGATCAAAACCCTAAATGCCCTCAGATGGTCGGAAACCCTAGGGTGTTTCGACCTGTATGTTTCGAAAAGGGCTGGGAGGATTTGCACAGGAGGAAATAGGCTGCGCGGTGTGCGATGCGAGGCCTCGTCGAAGGATGGGAGGATAACTCAGCAAGAGTTTACGGAGATGGCATGGCAGGGGATTGTTTCATCGCCGGAGGTGGCAAAGGAGAGCAAGCATCAGATTGTGGAGACAGAGCATTTGTTGAAGGCGCTGTTAGAGCAGAAGAACGGTCTTGCTCGACGGATTTTCTCCAAGGCTGGAGTTGATAATACGCGCCTTCTTGAAGCTACGGATAGTTACATCCAGAGGCAACCTAAGGTCCTCAGTGAGTCTGCTGGTTCTATGCTGGGTAGGGATTTAGAGTCCTTAATTCAAAGAGCCAGGGAGTTTAAGAAAGAATATGGAGACTCCTTTGTGTCTGTTGAGCATTTAGTGCTTGGTTATGTAGACGACAAAAGATTTGGGAAGCAAATCTTTAAAGACTTTAAAGTTTCTCTTCAAATGCTGAAATCTGCTATACAAGCTATAAGGGGACACCAAACTGTTATTGATCAAGACCCAGAGGGCAAATATGAAGCTTTGGATAAATATGGTAAGGATTTAACAGCGATGGCACGTGAAGGAAAACTTGATCCAGTTATTGGAAGGGATGATGAGATAAGGAGGTGCATACAAATATTGTCTAGGAGGACCAAGAACAATCCTGTCTTAATTGGTGAACCTGGTGTAGGGAAAACTGCCATATCTGAAGGGCTTGCACAGAGGGTAGTTGAAGGAGATGTGCCCCAAGCTTTGATGAACCGCAGGTTGATATCTCTCGATATGGGTTCCCTAATAGCTGGAGCAAAATTCCGAGGTGAATTTGAAGACAGACTCAAGGCTGTATTGAAGGAAGTGACGGACTCTGATGGACAGATAATCCTTTTCATTGATGAAATCCATACTGTTGTTGGAGCAGGTGCGACAAATGGTGCCATGGATGCTGGAAATCTACTGAAGCCAATGCTAGGCCGCGGTGAGCTGCGTTGCATCGGAGCAACTACCCTTGATGAATACCGCAAATACATAGAGAAAGACCCGGCTCTGGAACGCCGCTTCCAGCAAGTGTATGTTGATCAGCCTACAGTTGAGGACACAGTCTCGATACTCCGCGGCCTGCGGGAAAGGTATGAGCTTCACCATGGAGTTCGCATCAGCGATAGCGCACTGGTGGATGCCGCAGTTCTTTCTGACCGTTATATCAGCGGCCGTTTCTTACCTGATAAAGCTATTGATTTGGTGGACGAGGCTGCTGCCAAGTTAAAAATGGAAATCACATCCAAACCCACTGTTTTGGATGAGATCAATCGATCTGTTATCAAAGTAGAGATGGAGCGTCTTTCTCTAACGAATGACACAGACAAAGCCTCAAAAGAGAGACTGGCTCGTCTCGACGCGGAGCTGTCTCTCCTGAAAAAAAGGCAGGCAGAGCTCACCGACCAATGGGAGCACGAGAAATCGGTGATGACACGGATTCAATCCGTAAAGGAAGAGATTGATAGGGTGAGCATAGAGGTTCAGCAGGCTGAGCGGGAGTATGATTTGAATCGCGCGGCGGAGCTCAAGTACGGGAGCCTGAACAGCTTGCAGCGCCAACTCCACGACGCAGAGAAGGAACTGAATGAGTACCAGAGTTCGGGGAAATCGATGCTCAGGGAAGAGGTCACAGGCAACGACATTGCTGAGATAGTCAGCAAATGGACGGGCATCCCGGTTTCCAAATTGCAGCAGTCGGAAAGGGAGAAGCTGCTGCATTTGGAGGAAGAGCTGCACAGACGCGTTGTGGGCCAAGATCCGGCGGTGAGAGCTGTGGCGGAGGCCATCCAAAGGTCAAGGTCCGGCCTCTCGGACCCCCACCGCCCGATCGCCAGCTTCATGTTCATGGGCCCCACAGGAGTCGGCAAGACGGAGCTCGCAAAAGCGCTCGCCTCTTACATGTTCAATACCGAGGAATCTTTAGTGAGAATCGACATGAGCGAGTACATGGAGAAGCATGCCGTTTCCAGACTGATCGGGGCGCCACCTGGCTATGTGGGATACGAGGAGGGCGGGCAGCTGACCGAGACCATTCGCCGGAGACCGTACGCCGTCATACTGTTCGACGAGATCGAGAAGGCGCACTCCGACGTGTTCAATGTCTTCCTCCAGATACTGGATGATGGCAGGGTGACCGACTCGCAGGGGCGAAGAGTGAGCTTCACCAACACTGTCATCATAATGACATCCAACGTGGGCTCGCAGTACATACTGAACCTGAACGACGAGAAGGGCGCCACCGCTTCAGCTTACGAGTCCATCAAGCAGAGGGTCATGGATGCCGCTAGAGCAATCTTCCGGCCGGAGTTCATGAACCGCGTCGACGAGTACATTGTTTTCCAGCCTTTGGATCGGGAGCAGATCAACAGCATTGTCAGGCTGCAGCTGGAGCGCGTGCAGGGGAGGCTGGCGGACAGGAAGATGAAGATTTTGGTCACGGATGCGGCAGTGGAGCTTCTGGGCAGCCTCGGGTACGACCCCAACTATGGGGCGAGGCCGGTGAAGCGCGTGATACAGCAGAATGTGGAGAATGAGTTGGCAAAAGGAATCCTCAGAGGGGATTTCAGGGATGAGGACACGCTGCAGGTCGACACTGAGCTCACGACCTTCTCCTCTGCTGGCCCACTTCCCCAGCACAAGTTGGTTTTCCGAAGGCTGGCCCACGGTGGCGCTTCCCTTGGTAAGCAGCCGGCGGCCAACGAGGCGGCATTCCCCGCCCGATAATTTCTTGAAATTTCTTAATAGATGTAGTGGAAATAATGCGGCAGTATCCCTATACTTATTATTGTTGTTGTTTCATATATTATGTTGTGATTATGTATATTTTTTAAATGGATGTCTGGGTTCAGATGTTAGCATATAAAGCATTTGCTTGAGATCATGTAATGTTAAACATAAAATAAAAATTTTGGTTTAATTTTAAGGACTTGGTTTAATGAATATTATTTATAATAGAATATTAAATATGCATATTAGAA

Network for GWHGAAEX003946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02861.19	Clp_N	103	152	1.60E-15
PF02861.19	Clp_N	178	229	9.40E-11
PF00004.28	AAA	287	419	2.00E-12
PF07724.13	AAA_2	684	852	2.70E-55
PF10431.8	ClpB_D2-small	859	939	1.90E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0042026	Biological Process	protein refolding
GO:0019538	Biological Process	protein metabolic process
GO:0009408	Biological Process	response to heat
GO:0005524	Molecular Function	ATP binding
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	80.180
SRP064423	SRR2545915	Juvenile tuber	259.800
SRP108465	SRR5643513	five period of Gastrodia elata	45.390
	SRR5643514	five period of Gastrodia elata	36.690
	SRR5643515	five period of Gastrodia elata	43.690
	SRR5643524	five period of Gastrodia elata	35.360
	SRR5643525	five period of Gastrodia elata	84.980
	SRR5643528	five period of Gastrodia elata	182.110
	SRR5643658	five period of Gastrodia elata	46.090
	SRR5643659	five period of Gastrodia elata	104.540
	SRR5643660	five period of Gastrodia elata	139.430
	SRR5643661	five period of Gastrodia elata	111.870
	SRR5643662	five period of Gastrodia elata	141.130
	SRR5643663	five period of Gastrodia elata	138.770
	SRR5643664	five period of Gastrodia elata	170.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	84.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	70.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	82.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	68.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	63.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	71.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	63.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.800
SRP279888	Gastro	Gastrodia elata tuber	149.96
	Juven	Juvenile tuber	108.52
	Mother_Gastro	Mother tuber of Gastrodia elata	55.66
	Mother_Juven	Mother tuber of Juvenile	77.35