Detail information of GWHGAAEX003947/evm.TU.scaffold_142.44


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695023860|ref|XP_009399121.1|0PREDICTED: heparanase-like protein 1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FF10|HPSE1_ARATH0Heparanase-like protein 1 (Precursor)
trEMBLtr|M0SU24|M0SU24_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P32620_001}
TAIRAT5G078300glucuronidase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014019336891955516-
Transcript Sequence

Network for GWHGAAEX003947

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module5

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03662.13Glyco_hydro_79n793959.60E-151
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07964HPSE Metabolic pathways map01100
Glycosaminoglycan degradationmap00531

Gene Ontology

GO term OntologyName
GO:0016798Molecular Functionhydrolase activity, acting on glycosyl bonds
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.490
SRR2545915Juvenile tuber27.810
SRP108465SRR5643513five period of Gastrodia elata74.430
SRR5643514five period of Gastrodia elata90.630
SRR5643515five period of Gastrodia elata77.750
SRR5643524five period of Gastrodia elata83.560
SRR5643525five period of Gastrodia elata66.650
SRR5643528five period of Gastrodia elata59.790
SRR5643658five period of Gastrodia elata68.810
SRR5643659five period of Gastrodia elata35.230
SRR5643660five period of Gastrodia elata21.100
SRR5643661five period of Gastrodia elata26.970
SRR5643662five period of Gastrodia elata23.700
SRR5643663five period of Gastrodia elata34.050
SRR5643664five period of Gastrodia elata23.530
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.120
SRR6049655Rhizomagastrodiae_C368-T10_good_145.300
SRR6049656Rhizomagastrodiae_C368-T07_good_155.080
SRR6049657Rhizomagastrodiae_C368-T07_good_139.680
SRR6049658Rhizomagastrodiae_C368-T04_good_126.230
SRR6049659Rhizomagastrodiae_C368-T04_good_115.110
SRR6049660Rhizomagastrodiae_C368-T01_good_135.450
SRR6049661Rhizomagastrodiae_C368-T04_good_133.590
SRR6049662Rhizomagastrodiae_C368-T01_good_155.520
SRR6049663Rhizomagastrodiae_C368-T01_good_133.670
SRR6049664Rhizomagastrodiae_C368-T10_good_161.620
SRR6049665Rhizomagastrodiae_C368-T10_good_161.620
SRP279888GastroGastrodia elata tuber 20.76
JuvenJuvenile tuber21.28
Mother_GastroMother tuber of Gastrodia elata 7.81
Mother_JuvenMother tuber of Juvenile 4.06