Detail information of GWHGAAEX003950/evm.TU.scaffold_142.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41979.00E-71FOG: PPR repeat
nrgi|743833579|ref|XP_010935299.1|0PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Elaeis guineensis]
Swissprottr|Q5XET4|PP142_ARATH8.00E-143Pentatricopeptide repeat-containing protein At2g01860
trEMBLtr|M0S0V9|M0S0V9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P18010_001}
TAIRAT2G018609.00E-71Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014020627162064191+
Transcript Sequence

Network for GWHGAAEX003950

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR4454720.25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.690
SRR2545915Juvenile tuber1.390
SRP108465SRR5643513five period of Gastrodia elata2.400
SRR5643514five period of Gastrodia elata2.300
SRR5643515five period of Gastrodia elata0.940
SRR5643524five period of Gastrodia elata1.990
SRR5643525five period of Gastrodia elata0.600
SRR5643528five period of Gastrodia elata0.730
SRR5643658five period of Gastrodia elata0.510
SRR5643659five period of Gastrodia elata1.190
SRR5643660five period of Gastrodia elata1.140
SRR5643661five period of Gastrodia elata1.870
SRR5643662five period of Gastrodia elata1.890
SRR5643663five period of Gastrodia elata1.680
SRR5643664five period of Gastrodia elata1.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.540
SRR6049655Rhizomagastrodiae_C368-T10_good_12.440
SRR6049656Rhizomagastrodiae_C368-T07_good_12.630
SRR6049657Rhizomagastrodiae_C368-T07_good_11.570
SRR6049658Rhizomagastrodiae_C368-T04_good_11.130
SRR6049659Rhizomagastrodiae_C368-T04_good_11.330
SRR6049660Rhizomagastrodiae_C368-T01_good_11.630
SRR6049661Rhizomagastrodiae_C368-T04_good_11.310
SRR6049662Rhizomagastrodiae_C368-T01_good_12.180
SRR6049663Rhizomagastrodiae_C368-T01_good_12.190
SRR6049664Rhizomagastrodiae_C368-T10_good_13.640
SRR6049665Rhizomagastrodiae_C368-T10_good_13.640
SRP279888GastroGastrodia elata tuber 1.50
JuvenJuvenile tuber1.14
Mother_GastroMother tuber of Gastrodia elata 0.43
Mother_JuvenMother tuber of Juvenile 0.46