Detail information of GWHGAAEX003953/evm.TU.scaffold_142.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|451946954|ref|YP_007467549.1| | 8.00E-14 | putative divalent heavy-metal cations transporter [Desulfocapsa sulfexigens DSM 10523] |
| KOG | KOG1558 | 2.00E-111 | Fe2+/Zn2+ regulated transporter |
| nr | gi|661882725|emb|CDP13728.1| | 2.63E-151 | unnamed protein product [Coffea canephora] |
| Swissprot | tr|Q852F6|ZIP2_ORYSJ | 4.00E-126 | Zinc transporter 2 (Precursor) |
| trEMBL | tr|A0A068V1J1|A0A068V1J1_COFCA | 1.00E-151 | Coffea canephora |
| TAIR | AT1G55910 | 2.00E-111 | zinc transporter 11 precursor |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000140 | 2148332 | 2153060 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003953
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02535.21 | Zip | 51 | 341 | 1.80E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0030001 | Biological Process | metal ion transport |
| GO:0046873 | Molecular Function | metal ion transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.060 |
| SRR2545915 | Juvenile tuber | 10.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.300 |
| SRR5643514 | five period of Gastrodia elata | 54.080 | |
| SRR5643515 | five period of Gastrodia elata | 33.850 | |
| SRR5643524 | five period of Gastrodia elata | 74.620 | |
| SRR5643525 | five period of Gastrodia elata | 33.380 | |
| SRR5643528 | five period of Gastrodia elata | 7.910 | |
| SRR5643658 | five period of Gastrodia elata | 36.690 | |
| SRR5643659 | five period of Gastrodia elata | 13.020 | |
| SRR5643660 | five period of Gastrodia elata | 15.230 | |
| SRR5643661 | five period of Gastrodia elata | 15.750 | |
| SRR5643662 | five period of Gastrodia elata | 9.900 | |
| SRR5643663 | five period of Gastrodia elata | 10.080 | |
| SRR5643664 | five period of Gastrodia elata | 8.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.810 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.83 |
| Juven | Juvenile tuber | 111.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.56 | |
| Mother_Juven | Mother tuber of Juvenile | 36.99 |