Detail information of GWHGAAEX003960/evm.TU.scaffold_143.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|327405187|ref|YP_004346025.1| | 0 | squalene/oxidosqualene cyclase [Fluviicola taffensis DSM 16823] |
| KOG | KOG0497 | 0 | Oxidosqualene-lanosterol cyclase and related proteins |
| nr | gi|695043754|ref|XP_009409584.1| | 0 | PREDICTED: cycloartenol synthase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O82139|CAS1_PANGI | 0 | Cycloartenol Synthase |
| trEMBL | tr|C7U323|C7U323_9LILI | 0 | Cycloartenol synthase {ECO:0000313|EMBL:CBD47302.1} |
| TAIR | AT2G07050 | 0 | cycloartenol synthase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000145 | 207140 | 257171 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003960
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13249.5 | SQHop_cyclase_N | 99 | 402 | 3.40E-39 |
| PF13243.5 | SQHop_cyclase_C | 416 | 752 | 2.50E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01853 | CAS1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Steroid biosynthesis | map00100 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016104 | Biological Process | triterpenoid biosynthetic process |
| GO:0000250 | Molecular Function | lanosterol synthase activity |
| GO:0042300 | Molecular Function | beta-amyrin synthase activity |
| GO:0016866 | Molecular Function | intramolecular transferase activity |
| GO:0005811 | Cellular Component | lipid particle |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.680 |
| SRR2545915 | Juvenile tuber | 16.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.920 |
| SRR5643514 | five period of Gastrodia elata | 10.280 | |
| SRR5643515 | five period of Gastrodia elata | 3.850 | |
| SRR5643524 | five period of Gastrodia elata | 8.700 | |
| SRR5643525 | five period of Gastrodia elata | 0.540 | |
| SRR5643528 | five period of Gastrodia elata | 1.110 | |
| SRR5643658 | five period of Gastrodia elata | 1.180 | |
| SRR5643659 | five period of Gastrodia elata | 15.590 | |
| SRR5643660 | five period of Gastrodia elata | 18.350 | |
| SRR5643661 | five period of Gastrodia elata | 13.860 | |
| SRR5643662 | five period of Gastrodia elata | 17.990 | |
| SRR5643663 | five period of Gastrodia elata | 8.450 | |
| SRR5643664 | five period of Gastrodia elata | 19.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.53 |
| Juven | Juvenile tuber | 46.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.12 | |
| Mother_Juven | Mother tuber of Juvenile | 11.29 |