Detail information of GWHGAAEX003961/evm.TU.scaffold_143.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379012008|ref|YP_005269820.1| | 7.00E-23 | serine/threonine-protein kinase PrkC [Acetobacterium woodii DSM 1030] |
| nr | gi|672157013|ref|XP_008798198.1| | 0 | PREDICTED: U-box domain-containing protein 52 [Phoenix dactylifera] |
| Swissprot | tr|Q9SW11|PUB35_ARATH | 3.00E-146 | Serine/threonine-protein kinase |
| trEMBL | tr|M0SVT1|M0SVT1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05020_001} |
| TAIR | AT2G24370 | 0 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000145 | 277298 | 282486 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003961
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00582.25 | Usp | 14 | 144 | 1.50E-09 |
| PF00069.24 | Pkinase | 439 | 692 | 4.40E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-IXb |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.660 |
| SRR2545915 | Juvenile tuber | 2.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.940 |
| SRR5643514 | five period of Gastrodia elata | 4.790 | |
| SRR5643515 | five period of Gastrodia elata | 3.530 | |
| SRR5643524 | five period of Gastrodia elata | 4.640 | |
| SRR5643525 | five period of Gastrodia elata | 4.270 | |
| SRR5643528 | five period of Gastrodia elata | 4.780 | |
| SRR5643658 | five period of Gastrodia elata | 5.750 | |
| SRR5643659 | five period of Gastrodia elata | 4.430 | |
| SRR5643660 | five period of Gastrodia elata | 6.120 | |
| SRR5643661 | five period of Gastrodia elata | 5.530 | |
| SRR5643662 | five period of Gastrodia elata | 5.170 | |
| SRR5643663 | five period of Gastrodia elata | 4.910 | |
| SRR5643664 | five period of Gastrodia elata | 4.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.92 |
| Juven | Juvenile tuber | 6.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.38 | |
| Mother_Juven | Mother tuber of Juvenile | 9.75 |