Gene detail

Detail information of GWHGAAEX003974/evm.TU.scaffold_143.23

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1091	Ypt/Rab-specific GTPase-activating protein GYP6
nr	gi\|672156832\|ref\|XP_008798103.1\|	PREDICTED: uncharacterized protein LOC103713096 [Phoenix dactylifera]
trEMBL	tr\|M0REW0\|M0REW0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P02830_001}
TAIR	AT4G29950	Ypt/Rab-GAP domain of gyp1p superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000145	987725	1002459	+

Transcript Sequence
>GWHTAAEX003974 AAAAAAAAAATCCGTCGAATGAGTTTCAATCAAATCAAAGCAACGATGCTTTTTAACAATTACTCGAAGCCCCTATAAATATCTCTTTTGTAGCTCAATTCTTGAACTTCTCTCACCTTTTGTCCCCTCCAGCTGCAATCTAACCCCACCAGATTTCGTCTCTCTCCATCCAAGGCGCGAATTCGTCAGGAAAAAATTGCGGGAGATCGATGGTAGGGGAACCGGCAGAGCTGTTGCTACCGGGTTCCTCCTGCGATGGGCTGAGATTCTGCAGCCTTCGGGGAGTCAGATGGAGGACTAATCTCGGAATACTGCCAGCTTCGGAATCAGCCTCTATCGATGATCTGCGCCGCGTCGCCGCGGATTCTCGAAGAAGTTATGCAAGCTTGAGGCGTCGATTACTAATAGATCCCCATGTTCTGAAGGAAGGAACTCCTGATCTAGCCATTGATAATCCTCTATCACAAGATCCTGAGAGCACTTGGGGTCGCTTCTTTCACCATGCAGAAATTGAGAAAATGGTTGAACAGGATTTGTCGAGGTTGTATCCAGAAGATGGTAGTTACTTTCAAACCTCTGCATGCCAAGGCATGCTAAGAAGAATCTTGTTATTGTGGTGCCTTAGGCATCCCAAGTATGGATATGGCCAAGGAATGCATGAACTGTTGGCTCCGCTAGTATATGTACTACATGCTGATCTTGATTACCTATCTAAAGTTCGCCGGCTTTACGTGGACTACTTTACTGATGAATTTGATGAATTCTTATACCCAGACAGCGATGTCCTCTCTTATAATAGAACAAAAAAATCTAAAAGCTGGGATTTAGGTGGCGACCGTAACTTGTATCAAGGCATTGCGCCCAAAGTCACATGCCTCGGCGATCTTGATCCAGATACAAGGGATATTTACTTGTTAAGCGATGCATATGGAGCCGAAGGTGAGCTGGGTGTGGTTATATCTGAGAGATACATGGAGCATGATGCTTACTGTATGTTCAATGCTTTAATGGGTGGCGCTAATGGAGTTGTGGCAATGGCTGACCTCTTTTCTGTGTCCTCTTCTATTGGATATAGCTCAGGTATACCTCCTATAATTGAGGCCTCATCTGCACTGTATCACTTGCTTTCTCTTGTAGATTCATCTCTTCACGATCACCTTACTGAATTCAAGGTGGAACCCCAATATTTTGCACTTAGATGGTTGCGTGTCCTATTTGAACGGGAATTTTCACTTAATGATCTATTAATTATTTGGGATGAGTTGTTATCTTTCTCCAATGATTCATGTATGGAGAATGATGAATATCACTTCAGAATCTTATGCTCGCCCCGAGGAAGCTTCATAGCTTCAATGGCAGTCTCCATGCTACTTTATGTTAGGTCATCTCTGTTAGCCACTGAGAATGCAACTTCCTGCCTCCAGAGATTATTGAACTTCCCCAGGAATATAAATGTTATGAAACTAATTGAGAGGGCAAGGTCCTTTCAATCTCTTGCTTGGGAATCAAACATATTATCACCATCTTCATCGCGCAATAATTCCTCAAAAATTGGGTTTTTAGCAGTTAGTGGAGCCTGTTCAGTACCTCCTAAGACACCAAATAGAATATTACCAGACAGCTACTGGGAAGAGAAATGGAGTGTGCTCCAGAAGGAACAAATGCTTCAAAGGAATGATTTTGGCCAAGGGAGGAAGATCAAGGACTTGATAGGGAAGAAACTAGGGCTTTCTAGGGCAGAATCAGATCCTTCTCCTGCCAAAAACTTTAGTGCGAAGAAACAGGCGGTGTCTTCTATCAGGCGTAGGTTATTTGATGATTTGTCTCAGAACTTTAAATCTGAAAGTGATTCAGATCATCGTATTTTACCAGATCAAGAGTCTGCTCTAAATGAAGATGCGAGCAAGGTTTTACTTAAAGAGCCAGCGGAACAAAATATTGTCAGAATCTCTGAAGAGAGATCAGAGCACCTTGATGAAAAAACATGTATAAATGCAGAAAAAGTTTCAGTTACTTCTGCTATAGGTCCGACTGGTAAAGGGAATGATATTGAATTTGAGTCTGAGAAAAGTACTCTCACTACGGATTCATTTATTGAAGCAACTGAAGATGAAAATACTTATACTGAGGAAGAATGCAATAGTCATTCTGAGAATTTTGTACTTTCTAACGACATAGAAGCTGATGCTGCTAGTGCCATTTCTGAACCAAATGAAGATACTAATGTGGTAGAGGTACCAGAAATCAAGGAACGAAAAATGCTTTCAGGCAGGTTTCCTTGGTTTTGGAAGTTTGGTAAAGGAAATTCATCTGAAGGAAACTTAGAGAGAGGAGTAAATGCAAAAACACAGAGGTCCACTTTCTTTGTAAATGGAAATGATTGCCAACAAACTTTAGGAACTTCAACTTCTGACCGAAGCAACTGTACTGATAGTGTGAGGATGGAAGTTGTGGACAAGAAAATGATGGGCACCCTTAAGAATCTTGGACAATCAATGCTTGAGAATATTCAGGCCATTGAATCAGTATTCCAGCAAGAAAGAGGACAAGCAGGCAATGTCCTCGGCGGTAAAGGGCAAGCTACAGCCATTGCAGCCCTTAAGGAACTTCGAAAGGTCAGCAATCTGTTGTCAGAGATGTGAGCGGAAAGCTTTCATCAGAATCTGTAAGATGATTGTATGATTCCTTCTCTTATTCAACTTAAAGTTTCTTTGCCTCTCTTTTTATTTTTCCTTGCGAGCATCTATGATTATTTTGCAAGTACCAGCTGCAATTCATGAGAGGATGGTTGCCGCAAATCCATTTTTGGATTCTATTGCACCTTCTAAACAGATTGTCTGCGGCATTGCAATCCTCCATTTTGTAATTAATAATGTACTGCATGTTCCCCAATGAAAGATGAGCTCTAGAACGGATTTAGTTAATCTATTCTAAGGAAGGGTATAGGAAAATACAAAAGTAGCAAACACAAAAGTTTTTCATATCTGGTTCCATAGCAGAGCAATCCAGTTGCTCTTTATTTTAAATTGGATCATGGTTCAAGCCATTCTCCCCTTCGCAGGCCGAGCTTCTCTTCAGTAGCACTTATGCTGATGATTAAGCACACCTGCATCTGCGCAGGCCATCGTCTCGCGCTTAGGGGACTCTTCTCAACAGGAGAAACTAGGATTCGCCTCGTCGGAGATCCAAGGGTGGGAAAGAGTAGTGCGGTCCTTTGTGACGATCCTCTGGCCGTCCATTGCCTCCTCCGTGACTGCGATTTGCCCTCTTTTTTATTTTTTTTGATAGCGTGGGTGATTAAGAGAGATGGAGACAATGCTCCTTTTGGACTAAATATCTCTTTAATGAACTGTTATTTGTTTAGCATCCCTTAGATTATTTGTGATTTTTCTCTTGGGACTAATGTTGTTCAACTTAAATAAAGTTATAAATGTATATCTGTGAGAAATGAGAGAGAGAGAGAGAGAGAGAGAACAGCGATTTGAGAGAAAGATAGGTTATGCTACTTTGCCATACAAACAAACCTAATGTACTCTTCTGCAAACAACTCTTTTTGTCCATAGCAAGTTTTGGATTGCTAAAGTATGAAGTTATTGCAAGGCAAATTTCTATGTTTATTATTTTATAATAATTATCATTTTTAAATTTAGGCTATTAAATTTTTTTATGAATGTGAGATGTGCTATGCTAGCACATTGT

Network for GWHGAAEX003974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00566.17	RabGAP-TBC	100	161	1.80E-11
PF00566.17	RabGAP-TBC	288	356	6.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.390
SRP064423	SRR2545915	Juvenile tuber	16.100
SRP108465	SRR5643513	five period of Gastrodia elata	30.030
	SRR5643514	five period of Gastrodia elata	72.560
	SRR5643515	five period of Gastrodia elata	39.750
	SRR5643524	five period of Gastrodia elata	58.210
	SRR5643525	five period of Gastrodia elata	68.560
	SRR5643528	five period of Gastrodia elata	90.990
	SRR5643658	five period of Gastrodia elata	93.870
	SRR5643659	five period of Gastrodia elata	9.050
	SRR5643660	five period of Gastrodia elata	10.420
	SRR5643661	five period of Gastrodia elata	8.450
	SRR5643662	five period of Gastrodia elata	12.680
	SRR5643663	five period of Gastrodia elata	14.230
	SRR5643664	five period of Gastrodia elata	12.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.170
SRP279888	Gastro	Gastrodia elata tuber	15.69
	Juven	Juvenile tuber	18.49
	Mother_Gastro	Mother tuber of Gastrodia elata	107.36
	Mother_Juven	Mother tuber of Juvenile	107.35