Detail information of GWHGAAEX003979/evm.TU.scaffold_143.31_evm.TU.scaffold_143.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0240 | 0 | Kinesin (SMY1 subfamily) |
| nr | gi|743861887|ref|XP_010943401.1| | 0 | PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Elaeis guineensis] |
| Swissprot | tr|Q0DV28|ARK1_ORYSJ | 0 | Armadillo repeat-containing kinesin-like protein 1 |
| trEMBL | tr|K4A5N0|K4A5N0_SETIT | 0 | Kinesin-like protein {ECO:0000256|RuleBase:RU000394} |
| TAIR | AT1G01950 | 0 | armadillo repeat kinesin 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000145 | 1370984 | 1491656 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003979
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00225.22 | Kinesin | 70 | 405 | 1.50E-93 |
| PF00514.22 | Arm | 654 | 691 | 1.90E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007018 | Biological Process | microtubule-based movement |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003777 | Molecular Function | microtubule motor activity |
| GO:0008017 | Molecular Function | microtubule binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 87.630 |
| SRR2545915 | Juvenile tuber | 65.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.920 |
| SRR5643514 | five period of Gastrodia elata | 29.980 | |
| SRR5643515 | five period of Gastrodia elata | 30.270 | |
| SRR5643524 | five period of Gastrodia elata | 30.620 | |
| SRR5643525 | five period of Gastrodia elata | 31.630 | |
| SRR5643528 | five period of Gastrodia elata | 25.790 | |
| SRR5643658 | five period of Gastrodia elata | 28.530 | |
| SRR5643659 | five period of Gastrodia elata | 34.990 | |
| SRR5643660 | five period of Gastrodia elata | 33.840 | |
| SRR5643661 | five period of Gastrodia elata | 30.360 | |
| SRR5643662 | five period of Gastrodia elata | 35.330 | |
| SRR5643663 | five period of Gastrodia elata | 33.630 | |
| SRR5643664 | five period of Gastrodia elata | 36.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.11 |
| Juven | Juvenile tuber | 45.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.64 | |
| Mother_Juven | Mother tuber of Juvenile | 29.39 |