Gene detail

Detail information of GWHGAAEX003980/evm.TU.scaffold_143.34

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|560142357\|ref\|YP_008835254.1\|	1.00E-61	DEAD/DEAH box helicase [Pandoraea pnomenusa 3kgm]
KOG	KOG0347	0	RNA helicase
nr	gi\|743779619\|ref\|XP_010920280.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Elaeis guineensis]
Swissprot	tr\|A3AVH5\|RH13_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 13
trEMBL	tr\|D7SZR5\|D7SZR5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23744.3}
TAIR	AT3G16840	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000145	1556833	1634456	+

Transcript Sequence
>GWHTAAEX003980 TAATATTATAATTTTGCATTGGCGATATCCTAAGGAAAGCATGTTTTTAGGGTGTTAGTTTTAACCCCCTTTGAGTACCCGCTCAGCGGCTTGCCTCCAGTTCTGCTCCGAGCGCTATGTCCGAATCAACTCCGCCTACGTCTGATTCTGCGAAGAAGAATATGAAGAGGAGGCGGAAGCATAAGATGTCCCAAGCTCTAGAAATTTCTGAAATTTCTGAACTCGCTCTTCTCTCTGACGGGATCGAAGGAGGATTTTTTTCCCTTGAAGAAATGAACGAGGCAGAATACTGTTTCATCGCTGGAGTACCGAATCTTGGGTTCGCGAAGAAAATTGAAAATAATGTCTCTTCTTCTTCTGAGTCTAAAAAGAAGAAGCGGATTAATGGAGACGCAGGGTCAGAGGGGGAAGGCTCCTGTGTGGTTGATGAGGAAGGTCAAGAAGAAAGGAAGGTTTACAAAAAGCGCAAAAACAGTAAACAGAAGCGCAAGGATAGTTCCACAAGAGGGTTGGTACGTGATATGGCTCTGGAATGTGACACCGCAGAACGATGTGCCGAAGATGAGCTACCTCTTGTTGATGAAGAGAATAGTGCTTGGAATGAACTACGGCTTCATCCTCTCTTGATAAAATCAATGCACAGGCTTGGATTTAAAAAACCTACTCCAATACAGAAAGCTTGCATTCCTGTTGCTGCACATCATGGAAAGGATGTCATTGGTGCAGCACAAACAGGTTCTGGGAAAACCCTTGCATTTGGGTTACCAATTTTGCAACGCCTTCTTGAAGAACAGGAAAAGTCGAGAAGATTATTTCAAAAGGACACAGAAGCTACTGCTGGTTTTGGGGAAAGTTTTCTCCGAGCTTTAATTTTGGCTCCAACTAGAGAGCTTGCCTTACAGGTATCTGATCATCTCAAGAAAGCAGCAAAAGATATTAATGTTCATATAGTTTCTATAGTGGGTGGTATGTATGCAGAAAAACAGGAGAGACTACTTAGGAAGAGGCCTGAGATTGTTGTTGGAACTCCAGGAAGGCTGTGGGAATTGATGTCCGGGGGAAATGAGCATCTTGTTGAGCTACATTCTTTGTCGTTCTTTGTGCTGGATGAGGCTGATCGTATGATAGAGAATGGCCATTTTCATGAGCTCCAGTCCATTATTGACATGCTTCCAACTGTTAATGGCACTATCGAACAAGCTTCTGAAGGCAACAAAACTTGCAAAACAATTCAAAACTTCCCACGGAAAAAGCGACAAACATTTGTTTTCTCTGCCACTGTTGCCTTGTCTGACAATTTCCGCAAGAAACTTAGGCGCACCTCTTCCTCAACAAAATCTGCGTTTACAGATGGATTAACTTCCATAGAAAAACTGTCAGAGCAAGCTGGAATGAGGCCTGATGTTGCAATCATTGATTTGACAAACAATTCTATTGTGGCAGATAAGCTCGTAGAGTCATTCATCGAGTGCACTGAAGAGGAAAAAGAAGCATACTTGTACTACCTTCTTAGTGTTCATCGCAAAGGTCACACCATTGTGTTTTGCACATCAATTGCCGCACTACGTCGCATCACATCATTACTAAATCTTCTTGATGTTAATGTTTGGACCCTTCATGCTCAAATGCAACAAAGGGCACGTTTAAAGGCTATGGACCGTTTCCGTGACAATGAGCATGGGGTTTTGATAGCTACTGATGTAGCTGCAAGAGGCCTTGATATTCCTGGTATTAGAACTGTTGTTCACTATCAATTGCCACACTCGGCTGAGGTTTATATTCACAGATGTGGAAGAACGGCGAGAGCTTCATTTGATGGGTGCTCCATTGCACTAATTTCTCCTAGTGACAAAGCAAAGTTTGCTTCTTTGTGCAAATCGTTATCAAAGGAAAGTCTTAAAGAATTTTGTGTAGAATCTTCTTACATGTCTGATGTATTGAAGAGAATATCACTTGCTCGACAGATTGATAAAATACAACGAAAAAACTCTCAGGAGAATGCCAAAAAAAAATGGTTTGAACAAAATGCTGTGAATGTGGAGCTGACAATGGATGATTCCGAAAGTGAGGAAGAAAGAGTAAAGAACTATAAGCAAAAAAAATCTAGCTTCCTCCATTTGACGAAGTTACATCAGGTACTGAGGGCCTTATTATCAAAACCGTTGCAACCCACAGCATTTTCACACCGATTTTTGGCTGGGGCTGGGGTTTCGCCCCTTGTACAACAACAATTGGAGGCGCTGTCGAAAGAAAAAATGACTGTGCATTTGAGTGGTTCTCGAGAAAGCAAAACACGAGGGTTCGTTGTGATTGGCCAGGACTGTGTTGAGCCACTTCAGGCTCTAAGGAACTCAGGTCGTGAGGTCTGTGTTAACGTAGATAAAGGGAAAGAAGCAAGAAGGATGGCTGAGAAACGGAAAAATAAGCGAAAAGCAGAAAAAAAACAAGAACGCGAACAGAGGAGGAAGGCGAAGAAAAAAGTCAAGCAAGGCATGGAATGATTGCTTTTTGTATAAAAGTGTTCTCAAAGTAGTTTATTAAATGAAATGCTATATAATGCTCAAACCCTATGAAAATGGGAAAAAAGACATGTTTTGAGTTATTTGTTGAACAATGTAGTATGACTTATTAAATTGTACGAGTTTTATAGTGCAATTTTTTTTTTTTTTTTT

Network for GWHGAAEX003980

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	183	392	1.10E-42
PF00271.30	Helicase_C	457	564	1.70E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	56.070
SRP064423	SRR2545915	Juvenile tuber	41.940
SRP108465	SRR5643513	five period of Gastrodia elata	25.720
	SRR5643514	five period of Gastrodia elata	24.080
	SRR5643515	five period of Gastrodia elata	25.350
	SRR5643524	five period of Gastrodia elata	22.490
	SRR5643525	five period of Gastrodia elata	17.670
	SRR5643528	five period of Gastrodia elata	16.420
	SRR5643658	five period of Gastrodia elata	16.610
	SRR5643659	five period of Gastrodia elata	28.790
	SRR5643660	five period of Gastrodia elata	35.180
	SRR5643661	five period of Gastrodia elata	29.980
	SRR5643662	five period of Gastrodia elata	31.720
	SRR5643663	five period of Gastrodia elata	31.050
	SRR5643664	five period of Gastrodia elata	38.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.390
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.390
SRP279888	Gastro	Gastrodia elata tuber	40.76
	Juven	Juvenile tuber	39.84
	Mother_Gastro	Mother tuber of Gastrodia elata	26.21
	Mother_Juven	Mother tuber of Juvenile	42.42