Detail information of GWHGAAEX003984/evm.TU.scaffold_143.41


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG12676.00E-54Mitochondrial transcription termination factor, mTERF
nrgi|672183474|ref|XP_008812017.1|6.92E-88PREDICTED: uncharacterized protein LOC103723012 [Phoenix dactylifera]
trEMBLtr|A5B1K5|A5B1K5_VITVI1.00E-79Putative uncharacterized protein {ECO:0000313|EMBL:CAN78550.1}
TAIRAT5G079006.00E-54Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014518798861881443+
Transcript Sequence

Network for GWHGAAEX003984

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02536.13mTERF612275.20E-20
PF02536.13mTERF2383312.60E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilymTERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003690Molecular Functiondouble-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.060
SRR2545915Juvenile tuber23.070
SRP108465SRR5643513five period of Gastrodia elata22.750
SRR5643514five period of Gastrodia elata17.620
SRR5643515five period of Gastrodia elata20.970
SRR5643524five period of Gastrodia elata20.040
SRR5643525five period of Gastrodia elata17.180
SRR5643528five period of Gastrodia elata26.350
SRR5643658five period of Gastrodia elata16.050
SRR5643659five period of Gastrodia elata35.120
SRR5643660five period of Gastrodia elata32.770
SRR5643661five period of Gastrodia elata39.040
SRR5643662five period of Gastrodia elata41.380
SRR5643663five period of Gastrodia elata31.980
SRR5643664five period of Gastrodia elata23.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.300
SRR6049655Rhizomagastrodiae_C368-T10_good_133.920
SRR6049656Rhizomagastrodiae_C368-T07_good_126.620
SRR6049657Rhizomagastrodiae_C368-T07_good_118.240
SRR6049658Rhizomagastrodiae_C368-T04_good_119.010
SRR6049659Rhizomagastrodiae_C368-T04_good_114.300
SRR6049660Rhizomagastrodiae_C368-T01_good_118.850
SRR6049661Rhizomagastrodiae_C368-T04_good_117.160
SRR6049662Rhizomagastrodiae_C368-T01_good_130.970
SRR6049663Rhizomagastrodiae_C368-T01_good_124.280
SRR6049664Rhizomagastrodiae_C368-T10_good_129.020
SRR6049665Rhizomagastrodiae_C368-T10_good_129.020
SRP279888GastroGastrodia elata tuber 33.81
JuvenJuvenile tuber21.02
Mother_GastroMother tuber of Gastrodia elata 15.75
Mother_JuvenMother tuber of Juvenile 19.78