Gene detail

Detail information of GWHGAAEX003987/evm.TU.scaffold_143.44

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2295	C2H2 Zn-finger protein
nr	gi\|743812105\|ref\|XP_010929331.1\|	PREDICTED: serrate RNA effector molecule-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9ZVD0\|SRRT_ARATH	Serrate RNA effector molecule
trEMBL	tr\|M0RMW4\|M0RMW4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P30900_001}
TAIR	AT2G27100	C2H2 zinc-finger protein SERRATE (SE)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000145	1980407	2005056	+

Transcript Sequence
>GWHTAAEX003987 AGAAAACAGTCCTGTTCGAGACCCGACTGTGTTAATTTCATCTCCATCTCTCTTCTGATAGGGTTTCTCGATCCGAGCTTTGCTCTCCCATGACGGAAGTAATGGACCCGCCGGCTGATACCCTAGATCGAGCCGAGAGGAAGCCTTCTCCTGCCAATGGCTCCCCCCTTCCCCCGCCTCCTCCTCCCTCGAGGCGCAGGGAAAGGGATTCTAGGGAGCGGAGGGATGACTACTACGACTCGAGGAACCGCTCTCCTCCGCCCCCGCTTGCTTCGAGGGACAGGGAGTATCGAAGGAGGACCAGCATGAGCCCTCCTCTTTACCGCGACCGCCGTCACTCTCCGCCACGGCGCTCCCCACCTCCTGGAGGGTTCAAGCGTTATCGAAGGGATGACGGTGGTTACGAGAAGCGGAGGGGAAGCCCCAGGTATGGATATGATTATGGAGGTTACGATCGGGGAGGAAGGGGTGGATACGACGAACGGTCTCATGGTCGCTACATGACTCGCCCCACAGATTGGCCTGATACAGGGAGGGGCGGGTTTGATGGCTCTCAGCCTCAAAGGGAGGGTTTGATGACATACAAGCAATTTATTCAAGAACTAGAGGATGATATATTACCATCTGAAGCTGAAAGACGGTACGAAGAATATAGAACGGAATACATTTCTACTCAGAAGCGTGCTTATTTTGAAACTCATAAAGCTGAAGAATGGCTAAAGGACAAATATCATCCCACTAATTTAGTTGCTGTTATCGAAAGGCGAAATGAACATGCAAGGGCTGCAGCAAAGGAAATTTTACTTGATTTACAAAGTGGCACGCTAGATCTTGGTCCAGGCTTAACAAGTACTTTTTCCAACAAATCTGGAAATGTTAGTGATCCAAATTCTGAGGATGAAGCAGATGTTAGCGGTAAAAGGAGAAGGCATGGTAGAGGCCCAGCAAAAGAAAATGATTTATCTACTGCTCCTAAAGCTCATGCTGTCAGCTGTGAATCTAGAAGAATTCAAGTTGATATTTTACAAGCTCAAGCACTTGTTCGCAAAATTGATACTGAAAAGGGAATAGAAGATAATATTCTTTCAAGTACTGAACATGATAAACTAGAGGGTGAAAATTCTCATGGAGGATCTATGGGCCCAATTATAATTATACGGGGTTTGACAACAGTCAAAGGTCTTGAAGGGGCTGAGCTTTTGGATACACTTTTAACTTATTTGTGGCGTGTTCACAGTATAGATTACTATGGAATGTCTGAGACAAATGAAGGAAAAGGTGTTAGACATGTAAGAGCTGACAGCAAAGCTTTTGATGGATCAAATGCTCCAGGTTCTGGAACTGATTGGGAAAAAAAACTCGATTCATTTTGGAAGGAAAGGCTGAAGGGTCGGGATCCACTTGAACTAATGGCAGCTAAAGAAAAAATTGATGCGGCAGCTGTAGAAGCCCTAGACCCATATGTCAGGAAAATAAGAGATGAAAAATATGGTTGGAAGTATGGCTGTGGAGCCAAGGGTTGCACAAAATTGTTTCATGCTGCTGAATTTGTCCATAAGCATCTTAGACTCAAACACACCGAATTGGTGTTGGAGCTGACTTCAAAAGTGCGGGAGGATCTTTATTTTCAAAATTATATAAACGATTCAAAAGCACCTGGTAGTACTCCGATCATGCAGCAACTTTTACCGAAGGAGAAGCCTCCCAGGCGAAGGTCAGTCTTAGATGGCCGACTCAGAGATGATCGTGGTGGCGGAAGAGACCTTGGAAAAAGTGATCGGCCTGATGATGAGAAGTTCGACCGGAGTGATAACTCGCCTCATGATGGATCTGGAGGGGACGACCTGCAGCATGATGGTGCTTATGCACCACAAAGCTTGCACGGGGCTTCTCCTTTCCCTTCAGATATCCCGCTTCCACCCCCAGTTCTGATGCCCGTGCCAGGTGCCGGGCCTCTGGGACCTTTTGTGCCCGCTCCCCCAGATGTTGCCATGAGAATGATGAGGGAGCAGGGCGGTCCTTCTTCCCTCGAAGCAAATGGTGGTCCTCGCGGCAGAAAAGGAAGGTCTGGACCATTAATGGGCCCTCCCGGGCCAATTCTTGGCATTCCGCCTGCATTCCGGCACGATCCTCGCCGTATGAGAAGTTACCAGGATCTTGATGCCCCCGAAGATGAAGTGACTGTGATGGACTACAGGAGTTTATAGTATATATAGTCACAAGCCCGGCAGCAGGTCATACGTACCCTTTTGAATTGCAAAGTCTCTGTTTTGCAGGGGATTGTTTTCCCATTCTATTCAACTGCCCCGTAAGCTCATACTATTTCTATATATATATATATATATA

Network for GWHGAAEX003987

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12066.7	DUF3546	166	247	3.90E-19
PF04959.12	ARS2	416	605	2.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.370
SRP064423	SRR2545915	Juvenile tuber	40.950
SRP108465	SRR5643513	five period of Gastrodia elata	53.510
	SRR5643514	five period of Gastrodia elata	48.460
	SRR5643515	five period of Gastrodia elata	46.330
	SRR5643524	five period of Gastrodia elata	51.310
	SRR5643525	five period of Gastrodia elata	48.590
	SRR5643528	five period of Gastrodia elata	45.670
	SRR5643658	five period of Gastrodia elata	44.810
	SRR5643659	five period of Gastrodia elata	52.540
	SRR5643660	five period of Gastrodia elata	63.540
	SRR5643661	five period of Gastrodia elata	53.250
	SRR5643662	five period of Gastrodia elata	65.560
	SRR5643663	five period of Gastrodia elata	56.350
	SRR5643664	five period of Gastrodia elata	63.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	59.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	54.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.570
SRP279888	Gastro	Gastrodia elata tuber	69.57
	Juven	Juvenile tuber	123.92
	Mother_Gastro	Mother tuber of Gastrodia elata	67.77
	Mother_Juven	Mother tuber of Juvenile	121.35