Detail information of GWHGAAEX003989/evm.TU.scaffold_143.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01530Predicted RNA-binding protein (RRM superfamily)
nrgi|743804740|ref|XP_010927264.1|0PREDICTED: zinc finger CCCH domain-containing protein 40-like [Elaeis guineensis]
Swissprottr|Q5SNN4|C3H40_ORYSJ0Zinc finger CCCH domain-containing protein 40
trEMBLtr|A0A061DHR1|A0A061DHR1_THECC0CCCH-type zinc fingerfamily protein with RNA-binding domain {ECO:0000313|EMBL:EOX91717.1}
TAIRAT1G073600CCCH-type zinc fingerfamily protein with RNA-binding domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014520180442024939+
Transcript Sequence

Network for GWHGAAEX003989

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16131.4Torus1511946.30E-08
PF00076.21RRM_12302873.60E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12872RBM22, SLT11 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms78.510
SRR2545915Juvenile tuber75.790
SRP108465SRR5643513five period of Gastrodia elata179.900
SRR5643514five period of Gastrodia elata164.110
SRR5643515five period of Gastrodia elata148.340
SRR5643524five period of Gastrodia elata154.530
SRR5643525five period of Gastrodia elata137.180
SRR5643528five period of Gastrodia elata105.540
SRR5643658five period of Gastrodia elata129.820
SRR5643659five period of Gastrodia elata166.640
SRR5643660five period of Gastrodia elata193.460
SRR5643661five period of Gastrodia elata195.790
SRR5643662five period of Gastrodia elata206.340
SRR5643663five period of Gastrodia elata194.730
SRR5643664five period of Gastrodia elata223.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1219.700
SRR6049655Rhizomagastrodiae_C368-T10_good_1206.000
SRR6049656Rhizomagastrodiae_C368-T07_good_1174.880
SRR6049657Rhizomagastrodiae_C368-T07_good_1251.810
SRR6049658Rhizomagastrodiae_C368-T04_good_1202.640
SRR6049659Rhizomagastrodiae_C368-T04_good_1266.150
SRR6049660Rhizomagastrodiae_C368-T01_good_1253.640
SRR6049661Rhizomagastrodiae_C368-T04_good_1213.110
SRR6049662Rhizomagastrodiae_C368-T01_good_1155.190
SRR6049663Rhizomagastrodiae_C368-T01_good_1209.770
SRR6049664Rhizomagastrodiae_C368-T10_good_1157.650
SRR6049665Rhizomagastrodiae_C368-T10_good_1157.650
SRP279888GastroGastrodia elata tuber 156.96
JuvenJuvenile tuber278.93
Mother_GastroMother tuber of Gastrodia elata 158.91
Mother_JuvenMother tuber of Juvenile 207.33