Detail information of GWHGAAEX003991/evm.TU.scaffold_143.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|408490495|ref|YP_006866864.1| | 1.00E-30 | lipoprotein, leucine rich repeat protein [Psychroflexus torquis ATCC 700755] |
| KOG | KOG0619 | 1.00E-87 | FOG: Leucine rich repeat |
| nr | gi|743766943|ref|XP_010913718.1| | 7.30E-102 | PREDICTED: plant intracellular Ras-group-related LRR protein 1 [Elaeis guineensis] |
| Swissprot | tr|Q7XNY1|PIRL1_ORYSJ | 2.00E-90 | Plant intracellular Ras-group-related LRR protein 1 |
| trEMBL | tr|M0U6B5|M0U6B5_MUSAM | 4.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP04530_001} |
| TAIR | AT4G26050 | 1.00E-87 | plant intracellular ras group-related LRR 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000145 | 2101131 | 2104635 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003991
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 41 | 98 | 1.50E-11 |
| PF13855.5 | LRR_8 | 110 | 164 | 1.30E-07 |
| PF13855.5 | LRR_8 | 181 | 239 | 3.80E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.360 |
| SRR2545915 | Juvenile tuber | 4.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 62.340 |
| SRR5643514 | five period of Gastrodia elata | 4.520 | |
| SRR5643515 | five period of Gastrodia elata | 3.560 | |
| SRR5643524 | five period of Gastrodia elata | 10.780 | |
| SRR5643525 | five period of Gastrodia elata | 0.060 | |
| SRR5643528 | five period of Gastrodia elata | 0.060 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 1.490 | |
| SRR5643660 | five period of Gastrodia elata | 0.910 | |
| SRR5643661 | five period of Gastrodia elata | 3.000 | |
| SRR5643662 | five period of Gastrodia elata | 3.250 | |
| SRR5643663 | five period of Gastrodia elata | 0.430 | |
| SRR5643664 | five period of Gastrodia elata | 2.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 59.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 54.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.51 |
| Juven | Juvenile tuber | 5.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.45 | |
| Mother_Juven | Mother tuber of Juvenile | 1.58 |