Detail information of GWHGAAEX004000/evm.TU.scaffold_143.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 1.00E-24 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|672159473|ref|XP_008799499.1| | 1.23E-175 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Phoenix dactylifera] |
| Swissprot | tr|C0LGH3|Y5614_ARATH | 9.00E-99 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (Precursor) |
| trEMBL | tr|M5XSB2|M5XSB2_PRUPE | 7.00E-174 | Uncharacterized protein {ECO:0000313|EMBL:EMJ28421.1} |
| TAIR | AT1G56130 | 2.00E-97 | Leucine-rich repeat transmembrane protein kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000145 | 2558356 | 2572641 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004000
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 84 | 351 | 1.70E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_DLSV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.430 |
| SRR2545915 | Juvenile tuber | 34.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.880 |
| SRR5643514 | five period of Gastrodia elata | 28.140 | |
| SRR5643515 | five period of Gastrodia elata | 27.790 | |
| SRR5643524 | five period of Gastrodia elata | 31.650 | |
| SRR5643525 | five period of Gastrodia elata | 38.850 | |
| SRR5643528 | five period of Gastrodia elata | 38.110 | |
| SRR5643658 | five period of Gastrodia elata | 39.740 | |
| SRR5643659 | five period of Gastrodia elata | 21.870 | |
| SRR5643660 | five period of Gastrodia elata | 20.320 | |
| SRR5643661 | five period of Gastrodia elata | 21.460 | |
| SRR5643662 | five period of Gastrodia elata | 20.360 | |
| SRR5643663 | five period of Gastrodia elata | 20.470 | |
| SRR5643664 | five period of Gastrodia elata | 15.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.08 |
| Juven | Juvenile tuber | 41.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 46.35 | |
| Mother_Juven | Mother tuber of Juvenile | 53.39 |