Detail information of GWHGAAEX004003/evm.TU.scaffold_143.67
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479207041|ref|YP_007835331.1| | 2.00E-10 | Beta-glucanase/Beta-glucan synthetase [Megamonas hypermegale ART12/1] |
| nr | gi|695007862|ref|XP_009390494.1| | 2.40E-141 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q38910|XTH23_ARATH | 2.00E-134 | Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor) |
| trEMBL | tr|Q84JX3|Q84JX3_CUCSA | 2.00E-138 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT4G25810 | 8.00E-134 | xyloglucan endotransglycosylase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000145 | 2657099 | 2658122 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004003
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 34 | 99 | 1.80E-12 |
| PF00722.20 | Glyco_hydro_16 | 122 | 237 | 8.20E-40 |
| PF06955.11 | XET_C | 267 | 310 | 8.50E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14504 | TCH4 | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0048046 | Cellular Component | apoplast |
| GO:0005618 | Cellular Component | cell wall |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 490.890 |
| SRR2545915 | Juvenile tuber | 395.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 991.740 |
| SRR5643514 | five period of Gastrodia elata | 501.350 | |
| SRR5643515 | five period of Gastrodia elata | 2361.510 | |
| SRR5643524 | five period of Gastrodia elata | 381.500 | |
| SRR5643525 | five period of Gastrodia elata | 1796.790 | |
| SRR5643528 | five period of Gastrodia elata | 1351.290 | |
| SRR5643658 | five period of Gastrodia elata | 471.240 | |
| SRR5643659 | five period of Gastrodia elata | 2238.180 | |
| SRR5643660 | five period of Gastrodia elata | 1356.410 | |
| SRR5643661 | five period of Gastrodia elata | 1472.390 | |
| SRR5643662 | five period of Gastrodia elata | 2333.150 | |
| SRR5643663 | five period of Gastrodia elata | 1465.190 | |
| SRR5643664 | five period of Gastrodia elata | 6147.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1666.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 528.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1120.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1332.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 889.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1075.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2196.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 991.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 840.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2091.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 861.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 861.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1,544.00 |
| Juven | Juvenile tuber | 409.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4,203.54 | |
| Mother_Juven | Mother tuber of Juvenile | 4,011.97 |