Detail information of GWHGAAEX004006/evm.TU.scaffold_144.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|288560108|ref|YP_003423594.1|1.00E-6750S ribosomal protein L3 [Methanobrevibacter ruminantium M1]
KOGKOG0746060S ribosomal protein L3 and related proteins
nrgi|703138965|ref|XP_010106863.1|060S ribosomal protein L3 [Morus notabilis]
Swissprottr|P35684|RL3_ORYSJ060S ribosomal protein L3
trEMBLtr|W9S5Y9|W9S5Y9_9ROSA060S ribosomal protein L3 {ECO:0000313|EMBL:EXC12323.1}
TAIRAT1G431700ribosomal protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000154112322116826-
Transcript Sequence

Network for GWHGAAEX004006

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00297.21Ribosomal_L313703.10E-192
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02925RP-L3e, RPL3 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms99.020
SRR2545915Juvenile tuber127.290
SRP108465SRR5643513five period of Gastrodia elata282.240
SRR5643514five period of Gastrodia elata264.360
SRR5643515five period of Gastrodia elata239.100
SRR5643524five period of Gastrodia elata243.870
SRR5643525five period of Gastrodia elata124.470
SRR5643528five period of Gastrodia elata175.580
SRR5643658five period of Gastrodia elata122.360
SRR5643659five period of Gastrodia elata314.540
SRR5643660five period of Gastrodia elata345.000
SRR5643661five period of Gastrodia elata351.140
SRR5643662five period of Gastrodia elata260.190
SRR5643663five period of Gastrodia elata267.450
SRR5643664five period of Gastrodia elata249.190
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1246.170
SRR6049655Rhizomagastrodiae_C368-T10_good_1190.970
SRR6049656Rhizomagastrodiae_C368-T07_good_1305.450
SRR6049657Rhizomagastrodiae_C368-T07_good_1229.710
SRR6049658Rhizomagastrodiae_C368-T04_good_1225.490
SRR6049659Rhizomagastrodiae_C368-T04_good_1196.850
SRR6049660Rhizomagastrodiae_C368-T01_good_1266.420
SRR6049661Rhizomagastrodiae_C368-T04_good_1262.480
SRR6049662Rhizomagastrodiae_C368-T01_good_1414.500
SRR6049663Rhizomagastrodiae_C368-T01_good_1355.890
SRR6049664Rhizomagastrodiae_C368-T10_good_1396.370
SRR6049665Rhizomagastrodiae_C368-T10_good_1396.370
SRP279888GastroGastrodia elata tuber 277.30
JuvenJuvenile tuber336.43
Mother_GastroMother tuber of Gastrodia elata 141.42
Mother_JuvenMother tuber of Juvenile 174.68