Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|330508836\|ref\|YP_004385264.1\|	1.00E-08	exosome complex RNA-binding protein RRP4 [Methanosaeta concilii GP6]
KOG	KOG1004	2.00E-62	Exosomal 3'-5' exoribonuclease complex subunit Rrp40
nr	gi\|719985052\|ref\|XP_010251261.1\|	3.70E-136	PREDICTED: putative exosome complex component rrp40 isoform X1 [Nelumbo nucifera]
trEMBL	tr\|A0A067KGZ2\|A0A067KGZ2_JATCU	1.00E-134	Uncharacterized protein {ECO:0000313\|EMBL:KDP31104.1}
TAIR	AT2G25350_2	2.00E-62	Unannotated protein

Scaffold	Start	End	Strand
GWHAAEX00000154	161742	162470	+

Transcript Sequence
>GWHTAAEX004008 ATGGAAGCAGAAACTTCAAGTGCTTTGGCGATGAACCTCGTTGGCAGAGCTGTTGTTCCTGGCGACATTGTTTTGGACCTTACTAGCATGTCTGATCAAACAATTAGGCTTGGGCCAGGGCTACGTCAAGACTGCGAGGTGCTATCTGCGGTGAAGTCTGGAAAGCTCAAGTTCAAAGGGCCAAACAAGTACTGGGTAGAAAGCTCCCAAAAGAGATATATTCCCACTGCAGAAGACACAGTTCTTGGAATTGTTGTGGATACCAGAGCAGATAACTTTCTTGTGGACATTAAAGGCCCAACGTTAGCTTTTTTGCCTGTGCTTGCGTTTGAAGGAGGGACAAGGAGAAACATACCAAAATTTGAGATGGGCACATTGCTCTACATTCGCATTGTTAAGGCGAACACCTGCATGAATCCTGAGCTATCATGCACCGATGCCAACGGGAAAGCTGCAGAATTCGGCTCTTTGAAGGAGGGTTATATGTTTGAAACATCGACAGGATTGGCGAGGAAGCTACTTGGTTCCCCAACATGTCCAGTTCTGGAAGCTCTTGGAAGGAAACTTTCTTTTGAGATAGCCATAGGATTGAATGGCCGTGTTTGGGTGAATGCATCTTCTCCGTCGACTGTGATTCTTATATCTAATGCTATCATGAAGTCTGAGTTCCTGAGTGAGGTGCAGCAGAAGGTTTTGGTTGAGAAGCTCATGCAGAGGCTGCAAGCATAA

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K03681	RRP40, EXOSC3	RNA degradation	map03018

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.140
SRP064423	SRR2545915	Juvenile tuber	33.550
SRP108465	SRR5643513	five period of Gastrodia elata	33.870
	SRR5643514	five period of Gastrodia elata	29.860
	SRR5643515	five period of Gastrodia elata	29.340
	SRR5643524	five period of Gastrodia elata	28.700
	SRR5643525	five period of Gastrodia elata	27.780
	SRR5643528	five period of Gastrodia elata	31.530
	SRR5643658	five period of Gastrodia elata	18.810
	SRR5643659	five period of Gastrodia elata	42.770
	SRR5643660	five period of Gastrodia elata	45.160
	SRR5643661	five period of Gastrodia elata	41.190
	SRR5643662	five period of Gastrodia elata	45.510
	SRR5643663	five period of Gastrodia elata	45.340
	SRR5643664	five period of Gastrodia elata	39.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.590
SRP279888	Gastro	Gastrodia elata tuber	47.96
	Juven	Juvenile tuber	31.74
	Mother_Gastro	Mother tuber of Gastrodia elata	34.04
	Mother_Juven	Mother tuber of Juvenile	23.83